mm9_v1_chr2_-_80421054_80421454	31.1427	NANOG{mouse}.2	AK195509|Nckap1|50884|NCK-associated protein 1	AK191629|Nckap1|50884|NCK-associated protein 1	AK194160|Nckap1|50884|NCK-associated protein 1	AK198467|Nckap1|50884|NCK-associated protein 1	AK204199|Nckap1|50884|NCK-associated protein 1	AK213144|Nckap1|50884|NCK-associated protein 1	BC127067|Nckap1|50884|NCK-associated protein 1	AJ534525|Nckap1|50884|NCK-associated protein 1	NM_016965|Nckap1|50884|NCK-associated protein 1	BC060197|Nckap1|50884|NCK-associated protein 1
mm9_v1_chr7_+_138079669_138079779	21.7489	NANOG{mouse}.2	NM_019564|Htra1|56213|HtrA serine peptidase 1	AK128916|Htra1|56213|HtrA serine peptidase 1	AK132270|Htra1|56213|HtrA serine peptidase 1	AF179369|Htra1|56213|HtrA serine peptidase 1	AF172994|Htra1|56213|HtrA serine peptidase 1	BC013516|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr9_-_7932402_7932403	21.4112	NANOG{mouse}.2	AK212471|Yap1|22601|yes-associated protein 1	AK215870|Yap1|22601|yes-associated protein 1
mm9_v1_chr12_+_30687597_30687686	20.9155	NANOG{mouse}.2	BC037709|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr1_-_194681914_194681945	17.507	NANOG{mouse}.2	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr12_+_110782654_110782752	16.8275	NANOG{mouse}.2	BC024818|Meg3|17263|maternally expressed 3
mm9_v1_chr6_+_43215604_43215702	13.6512	NANOG{mouse}.2	NM_133674|Arhgef5|54324|Rho guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr15_+_78258993_78259251	12.6371	NANOG{mouse}.2	BC144818|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC144820|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC145799|Kctd17|72844|potassium channel tetramerisation domain containing 17	NM_001081367|Kctd17|72844|potassium channel tetramerisation domain containing 17
mm9_v1_chr14_+_51716032_51716087	12.1308	NANOG{mouse}.2	AY762362|Rnase4|58809|ribonuclease, RNase A family 4	AK050451|Rnase4|58809|ribonuclease, RNase A family 4	BC055355|Ang|11727|angiogenin, ribonuclease, RNase A family, 5
mm9_v1_chr9_-_31019412_31019424	11.8274	NANOG{mouse}.2	AK164012|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr12_+_80130149_80130201	11.815	NANOG{mouse}.2	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr16_+_62854129_62854197	11.4952	NANOG{mouse}.2	AK163032|Pros1|19128|protein S (alpha)	AK145501|Pros1|19128|protein S (alpha)	NM_011173|Pros1|19128|protein S (alpha)	Z25469|Pros1|19128|protein S (alpha)	BC128316|Pros1|19128|protein S (alpha)
mm9_v1_chr1_+_137635977_137636035	10.8762	NANOG{mouse}.2	CT010278|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr6_-_54543121_54543160	10.5689	NANOG{mouse}.2	BC029109|Fkbp14|231997|FK506 binding protein 14	NM_153573|Fkbp14|231997|FK506 binding protein 14	BC034313|Fkbp14|231997|FK506 binding protein 14	AK081692|Fkbp14|231997|FK506 binding protein 14	AK044876|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr19_-_44476302_44476309	10.4039	NANOG{mouse}.2	AK135642|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr2_+_121692687_121692705	10.2192	NANOG{mouse}.2	BC064446|Casc4|319996|cancer susceptibility candidate 4	NM_177054|Casc4|319996|cancer susceptibility candidate 4	NM_199038|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr15_+_78858641_78858641	9.58702	NANOG{mouse}.2	NM_008197|H1f0|14958|H1 histone family, member 0
mm9_v1_chr2_+_121692805_121692894	9.23911	NANOG{mouse}.2	BC034556|Casc4|319996|cancer susceptibility candidate 4	AK080364|Casc4|319996|cancer susceptibility candidate 4	AK051613|Casc4|319996|cancer susceptibility candidate 4	AK160708|Casc4|319996|cancer susceptibility candidate 4	AY484583|Casc4|319996|cancer susceptibility candidate 4	AY484585|Casc4|319996|cancer susceptibility candidate 4
mm9_v1_chr9_+_72596925_72596929	9.23262	NANOG{mouse}.2	AK195685|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr14_+_30781514_30781692	9.0407	NANOG{mouse}.2	NM_019979|Selk|80795|selenoprotein K	AK008419|Selk|80795|selenoprotein K	BC038049|Selk|80795|selenoprotein K	AK003206|Selk|80795|selenoprotein K	BC096677|Selk|80795|selenoprotein K	AK007523|Selk|80795|selenoprotein K	AK006674|Selk|80795|selenoprotein K	BC096044|Selk|80795|selenoprotein K
mm9_v1_chr18_+_35278553_35278581	8.98385	NANOG{mouse}.2	NM_009818|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	X59990|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK148496|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC060174|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC068316|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	D90362|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC048163|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr4_-_58083082_58083145	8.87667	NANOG{mouse}.2	AK136952|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr9_-_54509658_54509691	8.75311	NANOG{mouse}.2	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr18_+_35278538_35278551	8.69658	NANOG{mouse}.2	AK168635|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK036752|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149721|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149738|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK159339|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr11_-_55209320_55209338	8.54693	NANOG{mouse}.2	AK192259|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr18_+_35278585_35278617	8.44634	NANOG{mouse}.2	BC105576|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK004623|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr6_-_54543167_54543172	8.4401	NANOG{mouse}.2	AK030620|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr19_-_7292086_7292113	8.42451	NANOG{mouse}.2	NM_007750|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr18_+_37644674_37644812	8.38443	NANOG{mouse}.2	BC017149|Pcdhb17|93888|protocadherin beta 17	NM_053142|Pcdhb17|93888|protocadherin beta 17	AK077255|Pcdhb17|93888|protocadherin beta 17	AF326310|Pcdhb17|93888|protocadherin beta 17	AY013778|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr9_-_31019392_31019409	7.99963	NANOG{mouse}.2	AK013376|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z27070|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK149977|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK150020|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK087459|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK160471|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102455|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102456|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_009691|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z22592|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr7_-_149763600_149763608	7.66226	NANOG{mouse}.2	X58196|H19|14955|H19 fetal liver mRNA
mm9_v1_chr13_-_3803547_3803563	7.61163	NANOG{mouse}.2	BC005457|Calml3|70405|calmodulin-like 3	AK010118|Calml3|70405|calmodulin-like 3	NM_027416|Calml3|70405|calmodulin-like 3
mm9_v1_chr6_+_124462638_124462669	7.3877	NANOG{mouse}.2	NM_023143|C1ra|50909|complement component 1, r subcomponent A	AF148216|C1ra|50909|complement component 1, r subcomponent A
mm9_v1_chr11_-_120685860_120685860	7.37822	NANOG{mouse}.2	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr10_-_8605668_8605870	7.21636	NANOG{mouse}.2	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr5_-_116858596_116858671	7.16978	NANOG{mouse}.2	
mm9_v1_chr9_-_54509453_54509528	6.75753	NANOG{mouse}.2	AK129179|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	BC057322|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	AK054103|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr11_-_94902584_94902717	6.71356	NANOG{mouse}.2	AF267660|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK002647|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	BC021764|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	NM_133667|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chr7_+_150255257_150255421	6.70483	NANOG{mouse}.2	AB041597|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AB038011|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279796|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279797|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_001115085|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_020285|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_138631|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AK088052|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4
mm9_v1_chr10_-_60610238_60610394	6.55717	NANOG{mouse}.2	AK036747|Sgpl1|20397|sphingosine phosphate lyase 1	AK150053|Sgpl1|20397|sphingosine phosphate lyase 1	AK173137|Sgpl1|20397|sphingosine phosphate lyase 1	AF036894|Sgpl1|20397|sphingosine phosphate lyase 1	BC026135|Sgpl1|20397|sphingosine phosphate lyase 1	AK037789|Sgpl1|20397|sphingosine phosphate lyase 1	AK043024|Sgpl1|20397|sphingosine phosphate lyase 1	AK049342|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr15_-_89004279_89004426	6.39684	NANOG{mouse}.2	BC158086|Plxnb2|140570|plexin B2	BC172162|Plxnb2|140570|plexin B2	NM_001159521|Plxnb2|140570|plexin B2
mm9_v1_chr2_+_35111861_35111977	6.33772	NANOG{mouse}.2	AK148957|Gsn|227753|gelsolin	AK089934|Gsn|227753|gelsolin	AK168707|Gsn|227753|gelsolin	BC060377|Gsn|227753|gelsolin	AK151684|Gsn|227753|gelsolin	AK169670|Gsn|227753|gelsolin	AK168532|Gsn|227753|gelsolin	AK168461|Gsn|227753|gelsolin	AK167918|Gsn|227753|gelsolin	AK150359|Gsn|227753|gelsolin	AK153029|Gsn|227753|gelsolin	AK146969|Gsn|227753|gelsolin	AK168725|Gsn|227753|gelsolin	AK169041|Gsn|227753|gelsolin	AK166932|Gsn|227753|gelsolin
mm9_v1_chr7_+_147949708_147949754	6.3045	NANOG{mouse}.2	BC013451|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	NM_021282|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	DQ838976|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	DQ838977|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	X62595|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	BC042693|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1
mm9_v1_chrX_-_147248815_147248863	6.29146	NANOG{mouse}.2	AJ277114|Maged2|80884|melanoma antigen, family D, 2	NM_030700|Maged2|80884|melanoma antigen, family D, 2	AK169006|Maged2|80884|melanoma antigen, family D, 2
mm9_v1_chr1_-_36615225_36615265	6.25281	NANOG{mouse}.2	NM_001126047|Sema4c|20353|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm9_v1_chr9_-_31019234_31019381	6.18337	NANOG{mouse}.2	AK192126|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK192625|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK192927|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK198962|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK190139|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	BC052396|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	U15571|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	BC051999|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr11_-_102680467_102680523	6.16709	NANOG{mouse}.2	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr15_-_82991286_82991340	6.1568	NANOG{mouse}.2	AK178355|Cyb5r3|109754|cytochrome b5 reductase 3	AK181262|Cyb5r3|109754|cytochrome b5 reductase 3	AK183532|Cyb5r3|109754|cytochrome b5 reductase 3	AK187743|Cyb5r3|109754|cytochrome b5 reductase 3	AK190014|Cyb5r3|109754|cytochrome b5 reductase 3	AK211940|Cyb5r3|109754|cytochrome b5 reductase 3	AK211950|Cyb5r3|109754|cytochrome b5 reductase 3	AK213922|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr7_+_147949637_147949642	6.09885	NANOG{mouse}.2	L11650|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1
mm9_v1_chr17_-_35019039_35019055	6.09281	NANOG{mouse}.2	AK146812|C2|12263|complement component 2 (within H-2S)	NM_013484|C2|12263|complement component 2 (within H-2S)
mm9_v1_chr5_-_124329899_124330028	6.01282	NANOG{mouse}.2	BC141305|Gpr81|243270|G protein-coupled receptor 81	AK029064|Gpr81|243270|G protein-coupled receptor 81	AK046700|Gpr81|243270|G protein-coupled receptor 81	NM_175520|Gpr81|243270|G protein-coupled receptor 81
mm9_v1_chr8_+_28134259_28134401	5.78658	NANOG{mouse}.2	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr7_-_150646883_150646954	5.74144	NANOG{mouse}.2	U22399|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	BC005412|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK077844|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK132278|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_001161624|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_009876|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr11_-_102680999_102681013	5.70386	NANOG{mouse}.2	BC071230|Gjc1|14615|gap junction protein, gamma 1	NM_001159383|Gjc1|14615|gap junction protein, gamma 1	AY390396|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr7_-_146101096_146101214	5.61541	NANOG{mouse}.2	BC033278|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	AF041054|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	AK170865|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	BC046603|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	AK152610|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	AK014223|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	AK075943|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3	NM_009760|Bnip3|12176|BCL2/adenovirus E1B interacting protein 3
mm9_v1_chr5_-_145900858_145900915	5.54594	NANOG{mouse}.2	BC055927|Pdap1|231887|PDGFA associated protein 1	AK169233|Pdap1|231887|PDGFA associated protein 1	BC139204|Pdap1|231887|PDGFA associated protein 1	BC139205|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr1_-_82232392_82232507	5.3004	NANOG{mouse}.2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr8_-_8661238_8661245	5.27104	NANOG{mouse}.2	AK132512|Efnb2|13642|ephrin B2	AK134108|Efnb2|13642|ephrin B2	AK143059|Efnb2|13642|ephrin B2	AK142203|Efnb2|13642|ephrin B2	AK142283|Efnb2|13642|ephrin B2
mm9_v1_chr13_-_23802696_23802696	5.23153	NANOG{mouse}.2	AK150697|Hfe|15216|hemochromatosis
mm9_v1_chr4_+_114761644_114761734	5.1635	NANOG{mouse}.2	BC013542|Pdzk1ip1|67182|PDZK1 interacting protein 1	AB009296|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr13_-_23802635_23802683	5.1457	NANOG{mouse}.2	BC116746|Hfe|15216|hemochromatosis	BC116744|Hfe|15216|hemochromatosis	U66849|Hfe|15216|hemochromatosis	AK009581|Hfe|15216|hemochromatosis	AK088986|Hfe|15216|hemochromatosis	NM_010424|Hfe|15216|hemochromatosis
mm9_v1_chr5_-_44373000_44373008	5.11258	NANOG{mouse}.2	BC065774|Fgfbp1|14181|fibroblast growth factor binding protein 1	NM_008009|Fgfbp1|14181|fibroblast growth factor binding protein 1	AK146625|Fgfbp1|14181|fibroblast growth factor binding protein 1
mm9_v1_chr6_+_124462696_124462740	5.10081	NANOG{mouse}.2	BC004637|C1ra|50909|complement component 1, r subcomponent A	BC172078|C1ra|50909|complement component 1, r subcomponent A	AK138817|C1ra|50909|complement component 1, r subcomponent A
mm9_v1_chr14_+_76904316_76904371	4.87273	NANOG{mouse}.2	AK147039|Tsc22d1|21807|TSC22 domain family, member 1	NM_009366|Tsc22d1|21807|TSC22 domain family, member 1	AK145204|Tsc22d1|21807|TSC22 domain family, member 1	AK135277|Tsc22d1|21807|TSC22 domain family, member 1	AK135282|Tsc22d1|21807|TSC22 domain family, member 1	AK135514|Tsc22d1|21807|TSC22 domain family, member 1	AK148732|Tsc22d1|21807|TSC22 domain family, member 1	X62940|Tsc22d1|21807|TSC22 domain family, member 1	AK179000|Tsc22d1|21807|TSC22 domain family, member 1	BC026703|Tsc22d1|21807|TSC22 domain family, member 1
mm9_v1_chr2_+_84976516_84976632	4.86243	NANOG{mouse}.2	AK133580|Aplnr|23796|apelin receptor	NM_011784|Aplnr|23796|apelin receptor	BC039224|Aplnr|23796|apelin receptor	AK157582|Aplnr|23796|apelin receptor	AK087138|Aplnr|23796|apelin receptor	AK075706|Aplnr|23796|apelin receptor	AK052383|Aplnr|23796|apelin receptor	AK078374|Aplnr|23796|apelin receptor
mm9_v1_chr7_-_150646758_150646786	4.81707	NANOG{mouse}.2	U20553|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr11_-_116713532_116713613	4.81297	NANOG{mouse}.2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr18_+_37828606_37828758	4.73209	NANOG{mouse}.2	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr10_-_126978704_126978744	4.712	NANOG{mouse}.2	BC043675|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr15_+_58247016_58247063	4.60461	NANOG{mouse}.2	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr2_+_72244049_72244137	4.53116	NANOG{mouse}.2	AK137519|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene
mm9_v1_chr4_+_118781405_118781458	4.48882	NANOG{mouse}.2	AK155252|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK170425|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK089353|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	AK170873|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M22998|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr9_-_117539030_117539030	4.45847	NANOG{mouse}.2	AK046197|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172121|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr10_-_83996516_83996534	4.39031	NANOG{mouse}.2	AK030708|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr7_-_108025317_108025394	4.33863	NANOG{mouse}.2	AK033211|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr15_-_98783909_98783984	4.32724	NANOG{mouse}.2	M13445|Tuba1a|22142|tubulin, alpha 1A	NM_011653|Tuba1a|22142|tubulin, alpha 1A	AK077529|Tuba1a|22142|tubulin, alpha 1A	BC056169|Tuba1a|22142|tubulin, alpha 1A	BC083344|Tuba1a|22142|tubulin, alpha 1A	BC083343|Tuba1a|22142|tubulin, alpha 1A	BC085256|Tuba1a|22142|tubulin, alpha 1A	BC083345|Tuba1a|22142|tubulin, alpha 1A	AK145404|Tuba1a|22142|tubulin, alpha 1A	AK146983|Tuba1a|22142|tubulin, alpha 1A	AK167687|Tuba1a|22142|tubulin, alpha 1A	AK168762|Tuba1a|22142|tubulin, alpha 1A	AK169610|Tuba1a|22142|tubulin, alpha 1A	AK164335|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr4_+_118781336_118781380	4.30538	NANOG{mouse}.2	NM_011400|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M23384|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	BC055340|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr15_+_78858872_78858884	4.29544	NANOG{mouse}.2	AK051213|H1f0|14958|H1 histone family, member 0	AK090029|H1f0|14958|H1 histone family, member 0	AK146077|H1f0|14958|H1 histone family, member 0	AK153990|H1f0|14958|H1 histone family, member 0
mm9_v1_chr9_-_56008595_56008764	4.28235	NANOG{mouse}.2	AK089494|Tspan3|56434|tetraspanin 3	AK154919|Tspan3|56434|tetraspanin 3	AB009021|Tspan3|56434|tetraspanin 3	AF133427|Tspan3|56434|tetraspanin 3	AB072450|Tspan3|56434|tetraspanin 3	AK053325|Tspan3|56434|tetraspanin 3	AK141951|Tspan3|56434|tetraspanin 3	AK006798|Tspan3|56434|tetraspanin 3	AK152175|Tspan3|56434|tetraspanin 3
mm9_v1_chr14_+_122580904_122580944	4.26596	NANOG{mouse}.2	NM_029556|Clybl|69634|citrate lyase beta like	BC023398|Clybl|69634|citrate lyase beta like	AK009345|Clybl|69634|citrate lyase beta like	AF428254|Clybl|69634|citrate lyase beta like
mm9_v1_chr15_+_78858900_78859042	4.17905	NANOG{mouse}.2	X13171|H1f0|14958|H1 histone family, member 0	BC110361|H1f0|14958|H1 histone family, member 0	AK155312|H1f0|14958|H1 histone family, member 0	AK077473|H1f0|14958|H1 histone family, member 0	AK145675|H1f0|14958|H1 histone family, member 0
mm9_v1_chr10_+_97028456_97028463	4.13663	NANOG{mouse}.2	BC005550|Lum|17022|lumican	S79461|Lum|17022|lumican
mm9_v1_chr5_+_67067359_67067456	4.10469	NANOG{mouse}.2	NM_011670|Uchl1|22223|ubiquitin carboxy-terminal hydrolase L1
mm9_v1_chr19_-_44624857_44624862	4.10169	NANOG{mouse}.2	
mm9_v1_chr14_-_65716932_65716942	4.09113	NANOG{mouse}.2	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr6_+_72548583_72548626	4.07228	NANOG{mouse}.2	EF620363|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	EF620364|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	EF620365|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	AY704159|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	BC117751|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	NM_026159|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)	BC117750|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)
mm9_v1_chr14_-_70919994_70920083	4.02287	NANOG{mouse}.2	BC066062|Bmp1|12153|bone morphogenetic protein 1	AK220295|Bmp1|12153|bone morphogenetic protein 1	AK158218|Bmp1|12153|bone morphogenetic protein 1	AK154239|Bmp1|12153|bone morphogenetic protein 1	NM_009755|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr15_-_102019373_102019395	3.98065	NANOG{mouse}.2	AY033912|Csad|246277|cysteine sulfinic acid decarboxylase	AK186014|Csad|246277|cysteine sulfinic acid decarboxylase
mm9_v1_chr6_-_82724366_82724447	3.93115	NANOG{mouse}.2	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr2_-_104334276_104334479	3.9233	NANOG{mouse}.2	BC131663|Hipk3|15259|homeodomain interacting protein kinase 3	BC131664|Hipk3|15259|homeodomain interacting protein kinase 3	AF077660|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr15_-_102019443_102019495	3.91939	NANOG{mouse}.2	AK005015|Csad|246277|cysteine sulfinic acid decarboxylase	NM_144942|Csad|246277|cysteine sulfinic acid decarboxylase
mm9_v1_chr19_-_4877874_4877883	3.89674	NANOG{mouse}.2	BC111890|Actn3|11474|actinin alpha 3	AF093775|Actn3|11474|actinin alpha 3	NM_013456|Actn3|11474|actinin alpha 3
mm9_v1_chr2_-_32137306_32137330	3.88645	NANOG{mouse}.2	AB597965|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK216650|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene
mm9_v1_chr19_+_4855128_4855169	3.88632	NANOG{mouse}.2	NM_019861|Ctsf|56464|cathepsin F	AK165416|Ctsf|56464|cathepsin F
mm9_v1_chr2_-_104334728_104334748	3.84506	NANOG{mouse}.2	AK140130|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chrX_+_130442964_130443234	3.81916	NANOG{mouse}.2	NM_001083895|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	NM_026838|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	AK136935|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	BC028307|Srpx2|68792|sushi-repeat-containing protein, X-linked 2
mm9_v1_chr6_+_72548468_72548554	3.80138	NANOG{mouse}.2	AK144115|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)
mm9_v1_chr11_+_97702093_97702093	3.7901	NANOG{mouse}.2	NM_001080935|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr6_-_29559792_29559839	3.75059	NANOG{mouse}.2	AK049446|Tnpo3|320938|transportin 3	BC075678|Tnpo3|320938|transportin 3
mm9_v1_chr18_-_14841254_14841287	3.74568	NANOG{mouse}.2	BC065062|Ss18|268996|synovial sarcoma translocation, Chromosome 18	BC096742|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK039430|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK051601|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK052476|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK166053|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK083622|Ss18|268996|synovial sarcoma translocation, Chromosome 18	AK149325|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chr9_-_115219177_115219267	3.73201	NANOG{mouse}.2	AK145674|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK012153|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK154979|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK148065|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK018758|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AX799084|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK170079|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr4_+_118906433_118906436	3.68091	NANOG{mouse}.2	NM_001042411|Lepre1|56401|leprecan 1	AK159505|Lepre1|56401|leprecan 1
mm9_v1_chr7_+_138087002_138087002	3.63728	NANOG{mouse}.2	AK167667|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr18_-_14841294_14841422	3.62073	NANOG{mouse}.2	AK083887|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161369|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161370|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161371|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_009280|Ss18|268996|synovial sarcoma translocation, Chromosome 18	X93357|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chr15_+_78858886_78858894	3.58883	NANOG{mouse}.2	BC003830|H1f0|14958|H1 histone family, member 0	BC011493|H1f0|14958|H1 histone family, member 0
mm9_v1_chr13_-_115892166_115892179	3.58084	NANOG{mouse}.2	AK035870|Itga1|109700|integrin alpha 1	NM_001033228|Itga1|109700|integrin alpha 1
mm9_v1_chr6_-_126658429_126658452	3.57127	NANOG{mouse}.2	
mm9_v1_chr15_+_58247107_58247243	3.56266	NANOG{mouse}.2	AK122297|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	DQ228142|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr12_-_104970691_104970782	3.55285	NANOG{mouse}.2	M75716|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm9_v1_chr5_-_44485951_44486006	3.5328	NANOG{mouse}.2	AF305215|Prom1|19126|prominin 1	AY099088|Prom1|19126|prominin 1	AY223521|Prom1|19126|prominin 1	AY223522|Prom1|19126|prominin 1	NM_001163578|Prom1|19126|prominin 1	NM_001163581|Prom1|19126|prominin 1	NM_001163582|Prom1|19126|prominin 1	NM_001163583|Prom1|19126|prominin 1	NM_001163584|Prom1|19126|prominin 1	NM_001163585|Prom1|19126|prominin 1
mm9_v1_chr15_-_74583382_74583477	3.52662	NANOG{mouse}.2	AF141377|Lynx1|23936|Ly6/neurotoxin 1	AK013827|Lynx1|23936|Ly6/neurotoxin 1	NM_011838|Lynx1|23936|Ly6/neurotoxin 1	AK165295|Lynx1|23936|Ly6/neurotoxin 1	AK165314|Lynx1|23936|Ly6/neurotoxin 1	AK162920|Lynx1|23936|Ly6/neurotoxin 1	AK161907|Lynx1|23936|Ly6/neurotoxin 1
mm9_v1_chr17_+_64213350_64213395	3.39783	NANOG{mouse}.2	AK021175|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AK157828|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr8_-_114255972_114256047	3.38678	NANOG{mouse}.2	AK166248|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK079554|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK159168|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK159297|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK138372|Bcar1|12927|breast cancer anti-estrogen resistance 1	U28151|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167352|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167504|Bcar1|12927|breast cancer anti-estrogen resistance 1	NM_001198839|Bcar1|12927|breast cancer anti-estrogen resistance 1
mm9_v1_chr10_-_75130331_75130381	3.32617	NANOG{mouse}.2	AK169961|Cabin1|104248|calcineurin binding protein 1	AK171567|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr2_+_28061156_28061215	3.28341	NANOG{mouse}.2	D78262|Olfm1|56177|olfactomedin 1	D78263|Olfm1|56177|olfactomedin 1	NM_001038612|Olfm1|56177|olfactomedin 1	NM_019498|Olfm1|56177|olfactomedin 1
mm9_v1_chr4_-_134828699_134828733	3.21372	NANOG{mouse}.2	AK170942|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr9_-_60535699_60535786	3.16005	NANOG{mouse}.2	BC016574|Lrrc49|102747|leucine rich repeat containing 49	AK041627|Lrrc49|102747|leucine rich repeat containing 49	AK049268|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr9_+_98325217_98325252	3.14252	NANOG{mouse}.2	AK011641|Rbp1|19659|retinol binding protein 1, cellular	BC091751|Rbp1|19659|retinol binding protein 1, cellular	BC018254|Rbp1|19659|retinol binding protein 1, cellular
mm9_v1_chr14_-_70919701_70919955	3.08667	NANOG{mouse}.2	AK004995|Bmp1|12153|bone morphogenetic protein 1	L24755|Bmp1|12153|bone morphogenetic protein 1	BC053923|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr10_-_70622370_70622639	3.04734	NANOG{mouse}.2	AF319464|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	BC111523|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	NM_031397|Bicc1|83675|bicaudal C homolog 1 (Drosophila)	AK076154|Bicc1|83675|bicaudal C homolog 1 (Drosophila)
mm9_v1_chr2_+_174153230_174153414	3.02676	NANOG{mouse}.2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr5_+_31350991_31351042	3.02177	NANOG{mouse}.2	NM_027855|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK151307|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK151366|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	BC049637|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AB009018|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK002276|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK169267|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	BC057097|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene
mm9_v1_chr9_-_115219553_115219594	3.01315	NANOG{mouse}.2	AK152899|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr3_+_121656136_121656252	3.00025	NANOG{mouse}.2	BC040387|Arhgap29|214137|Rho GTPase activating protein 29	NM_172525|Arhgap29|214137|Rho GTPase activating protein 29
mm9_v1_chr10_-_78054639_78054708	2.95964	NANOG{mouse}.2	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr14_-_65716907_65716928	2.91568	NANOG{mouse}.2	
mm9_v1_chr6_-_36759929_36760219	2.89999	NANOG{mouse}.2	BC002064|Ptn|19242|pleiotrophin	BC048363|Ptn|19242|pleiotrophin	AK161964|Ptn|19242|pleiotrophin	D90225|Ptn|19242|pleiotrophin	AK161847|Ptn|19242|pleiotrophin	AK011699|Ptn|19242|pleiotrophin	AK133835|Ptn|19242|pleiotrophin	BC061695|Ptn|19242|pleiotrophin	AK017768|Ptn|19242|pleiotrophin	AK011346|Ptn|19242|pleiotrophin
mm9_v1_chr7_-_135073508_135073550	2.87785	NANOG{mouse}.2	AK010640|Prss8|76560|protease, serine, 8 (prostasin)	AF188613|Prss8|76560|protease, serine, 8 (prostasin)
mm9_v1_chr16_+_34995000_34995001	2.87652	NANOG{mouse}.2	BC038902|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr18_-_12978106_12978267	2.86875	NANOG{mouse}.2	BC057194|Osbpl1a|64291|oxysterol binding protein-like 1A	AF394063|Osbpl1a|64291|oxysterol binding protein-like 1A	AK133806|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr12_-_112615555_112615701	2.86644	NANOG{mouse}.2	BC138035|Cdc42bpb|217866|CDC42 binding protein kinase beta	BC138037|Cdc42bpb|217866|CDC42 binding protein kinase beta	AY277589|Cdc42bpb|217866|CDC42 binding protein kinase beta
mm9_v1_chr2_+_27532692_27532866	2.86095	NANOG{mouse}.2	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chrX_+_137909951_137910122	2.81344	NANOG{mouse}.2	AK133179|Col4a5|12830|collagen, type IV, alpha 5	NM_001163155|Col4a5|12830|collagen, type IV, alpha 5	NM_007736|Col4a5|12830|collagen, type IV, alpha 5	AB041350|Col4a5|12830|collagen, type IV, alpha 5	BC082788|Col4a5|12830|collagen, type IV, alpha 5
mm9_v1_chr11_-_120504978_120505082	2.77926	NANOG{mouse}.2	AK139185|Pycr1|209027|pyrroline-5-carboxylate reductase 1	NM_144795|Pycr1|209027|pyrroline-5-carboxylate reductase 1	BC006727|Pycr1|209027|pyrroline-5-carboxylate reductase 1
mm9_v1_chr15_-_34608458_34608547	2.76845	NANOG{mouse}.2	AK033975|Nipal2|223473|NIPA-like domain containing 2	NM_145469|Nipal2|223473|NIPA-like domain containing 2	BC016107|Nipal2|223473|NIPA-like domain containing 2	AK132530|Nipal2|223473|NIPA-like domain containing 2	AK087325|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr1_-_184397778_184397904	2.75744	NANOG{mouse}.2	AK192389|Capn2|12334|calpain 2	AK203804|Capn2|12334|calpain 2	AK198770|Capn2|12334|calpain 2	AK203361|Capn2|12334|calpain 2
mm9_v1_chr7_-_35048648_35048654	2.7541	NANOG{mouse}.2	AK129125|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr15_+_54402988_54403054	2.74343	NANOG{mouse}.2	AK035986|Mal2|105853|mal, T-cell differentiation protein 2	BC113154|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr11_+_3414884_3414917	2.74202	NANOG{mouse}.2	AK079358|Selm|114679|selenoprotein M	AY043488|Selm|114679|selenoprotein M	AK046034|Selm|114679|selenoprotein M	AK035312|Selm|114679|selenoprotein M	AK086243|Selm|114679|selenoprotein M
mm9_v1_chr2_+_35159780_35159798	2.72167	NANOG{mouse}.2	AK213866|Gsn|227753|gelsolin
mm9_v1_chr17_+_46787285_46787649	2.6526	NANOG{mouse}.2	AK155583|Cul7|66515|cullin 7	AK170580|Cul7|66515|cullin 7	NM_025611|Cul7|66515|cullin 7	AK082134|Cul7|66515|cullin 7	BC138998|Cul7|66515|cullin 7	BC139000|Cul7|66515|cullin 7	AK166135|Cul7|66515|cullin 7	AK170808|Cul7|66515|cullin 7	AK155454|Cul7|66515|cullin 7	AK144856|Cul7|66515|cullin 7	AK147156|Cul7|66515|cullin 7	AK147905|Cul7|66515|cullin 7
mm9_v1_chr1_+_75503651_75503799	2.64733	NANOG{mouse}.2	BC056627|Inha|16322|inhibin alpha	NM_010564|Inha|16322|inhibin alpha	X69618|Inha|16322|inhibin alpha
mm9_v1_chr2_-_176194724_176194771	2.60089	NANOG{mouse}.2	BC099603|100043387|100043387|predicted gene, 100043387	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr11_+_3414686_3414704	2.59063	NANOG{mouse}.2	AK079576|Selm|114679|selenoprotein M	NM_053267|Selm|114679|selenoprotein M
mm9_v1_chr2_+_119063090_119063114	2.58785	NANOG{mouse}.2	NM_016907|Spint1|20732|serine protease inhibitor, Kunitz type 1
mm9_v1_chr5_-_45190857_45190945	2.5801	NANOG{mouse}.2	U89487|Ldb2|16826|LIM domain binding 2	U89489|Ldb2|16826|LIM domain binding 2	BC079611|Ldb2|16826|LIM domain binding 2	AK147160|Ldb2|16826|LIM domain binding 2	AK146860|Ldb2|16826|LIM domain binding 2	NM_001077398|Ldb2|16826|LIM domain binding 2	NM_010698|Ldb2|16826|LIM domain binding 2
mm9_v1_chr13_+_30228352_30228364	2.57548	NANOG{mouse}.2	NM_153546|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	BC023845|Mboat1|218121|membrane bound O-acyltransferase domain containing 1
mm9_v1_chr11_+_3414792_3414875	2.5453	NANOG{mouse}.2	BC147333|Selm|114679|selenoprotein M	BC147332|Selm|114679|selenoprotein M	AK018791|Selm|114679|selenoprotein M
mm9_v1_chr2_-_176097168_176097202	2.53083	NANOG{mouse}.2	BC081427|100043387|100043387|predicted gene, 100043387	NM_001099327|100043387|100043387|predicted gene, 100043387	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	BC100574|100043387|100043387|predicted gene, 100043387	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr8_-_67212325_67212399	2.52789	NANOG{mouse}.2	AK146684|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK169017|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK045059|Sc4mol|66234|sterol-C4-methyl oxidase-like	BC006802|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK005441|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK005090|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK151135|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK154682|Sc4mol|66234|sterol-C4-methyl oxidase-like	NM_025436|Sc4mol|66234|sterol-C4-methyl oxidase-like	AK010570|Sc4mol|66234|sterol-C4-methyl oxidase-like
mm9_v1_chr8_+_125927015_125927184	2.49723	NANOG{mouse}.2	AK007744|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK190180|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK219335|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr3_+_145421870_145422044	2.48874	NANOG{mouse}.2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr8_+_36439713_36439732	2.48626	NANOG{mouse}.2	BC060261|Ppp1r3b|244416|protein phosphatase 1, regulatory (inhibitor) subunit 3B
mm9_v1_chr18_+_37644390_37644448	2.47061	NANOG{mouse}.2	AK122533|Pcdhb17|93888|protocadherin beta 17
mm9_v1_chr2_+_176493041_176493076	2.46777	NANOG{mouse}.2	BC100574|100043387|100043387|predicted gene, 100043387	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099327|100043387|100043387|predicted gene, 100043387	BC081427|100043387|100043387|predicted gene, 100043387	BC099603|100043387|100043387|predicted gene, 100043387
mm9_v1_chr16_+_8513513_8513607	2.46251	NANOG{mouse}.2	NM_001170978|Abat|268860|4-aminobutyrate aminotransferase	NM_172961|Abat|268860|4-aminobutyrate aminotransferase	AK132282|Abat|268860|4-aminobutyrate aminotransferase	AK165348|Abat|268860|4-aminobutyrate aminotransferase	AK160802|Abat|268860|4-aminobutyrate aminotransferase	AK083062|Abat|268860|4-aminobutyrate aminotransferase	AK036128|Abat|268860|4-aminobutyrate aminotransferase	BC058079|Abat|268860|4-aminobutyrate aminotransferase	BC058521|Abat|268860|4-aminobutyrate aminotransferase
mm9_v1_chr7_+_149684731_149684776	2.41824	NANOG{mouse}.2	L49466|Tnnt3|21957|troponin T3, skeletal, fast	L49467|Tnnt3|21957|troponin T3, skeletal, fast	L49468|Tnnt3|21957|troponin T3, skeletal, fast	L49469|Tnnt3|21957|troponin T3, skeletal, fast	L49470|Tnnt3|21957|troponin T3, skeletal, fast	L49471|Tnnt3|21957|troponin T3, skeletal, fast	L49472|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163664|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163665|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163666|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163667|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163668|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163669|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163670|Tnnt3|21957|troponin T3, skeletal, fast	NM_011620|Tnnt3|21957|troponin T3, skeletal, fast	U77779|Tnnt3|21957|troponin T3, skeletal, fast	BC003747|Tnnt3|21957|troponin T3, skeletal, fast	AK003147|Tnnt3|21957|troponin T3, skeletal, fast
mm9_v1_chr19_-_57083064_57083064	2.41009	NANOG{mouse}.2	NM_001177796|Afap1l2|226250|actin filament associated protein 1-like 2	NM_001177797|Afap1l2|226250|actin filament associated protein 1-like 2	NM_146102|Afap1l2|226250|actin filament associated protein 1-like 2
mm9_v1_chr15_-_81877947_81878027	2.40779	NANOG{mouse}.2	BC083315|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK134943|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	BC026755|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	BC054450|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK004489|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK168930|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	U95114|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK168808|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK145608|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK169103|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	AK145391|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	NM_011482|Nhp2l1|20826|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
mm9_v1_chr4_+_57580989_57581153	2.39739	NANOG{mouse}.2	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr2_-_127482430_127482430	2.38569	NANOG{mouse}.2	AK158653|Mal|17153|myelin and lymphocyte protein, T-cell differentiation protein	NM_001171187|Mal|17153|myelin and lymphocyte protein, T-cell differentiation protein	NM_010762|Mal|17153|myelin and lymphocyte protein, T-cell differentiation protein
mm9_v1_chr1_+_74283325_74283370	2.37369	NANOG{mouse}.2	BC115750|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr9_+_45178267_45178361	2.31684	NANOG{mouse}.2	NM_022004|Fxyd6|59095|FXYD domain-containing ion transport regulator 6
mm9_v1_chr4_+_151653120_151653375	2.31387	NANOG{mouse}.2	BC037650|Gpr153|100129|G protein-coupled receptor 153	BC029098|Gpr153|100129|G protein-coupled receptor 153	AY255610|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr10_+_77441365_77441428	2.26915	NANOG{mouse}.2	AK003097|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK004032|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	NM_026431|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC016605|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK075794|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC029982|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK165293|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK153233|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC010330|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK147511|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene
mm9_v1_chrX_-_101176574_101176590	2.25825	NANOG{mouse}.2	AF069992|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr14_+_63761507_63761880	2.25733	NANOG{mouse}.2	AK201025|Ctsb|13030|cathepsin B	AK201162|Ctsb|13030|cathepsin B	AF062526|Ctsb|13030|cathepsin B
mm9_v1_chr2_-_177575003_177575048	2.25381	NANOG{mouse}.2	BC092392|Gm14325|329575|predicted gene 14325	BC108403|Gm2004|100039000|predicted gene 2004	BC092391|Gm14325|329575|predicted gene 14325
mm9_v1_chr8_+_119028873_119028914	2.24143	NANOG{mouse}.2	BC048623|Dynlrb2|75465|dynein light chain roadblock-type 2	AK005789|Dynlrb2|75465|dynein light chain roadblock-type 2	NM_029297|Dynlrb2|75465|dynein light chain roadblock-type 2
mm9_v1_chrX_+_71035158_71035172	2.2325	NANOG{mouse}.2	AK191259|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr13_-_101514515_101514615	2.21592	NANOG{mouse}.2	AK003111|Mrps36|66128|mitochondrial ribosomal protein S36	AK009966|Mrps36|66128|mitochondrial ribosomal protein S36	BC028499|Mrps36|66128|mitochondrial ribosomal protein S36	BC096576|Mrps36|66128|mitochondrial ribosomal protein S36	AK007512|Mrps36|66128|mitochondrial ribosomal protein S36	AK003765|Mrps36|66128|mitochondrial ribosomal protein S36	AK009050|Mrps36|66128|mitochondrial ribosomal protein S36	NM_001190264|Mrps36|66128|mitochondrial ribosomal protein S36	NM_025369|Mrps36|66128|mitochondrial ribosomal protein S36
mm9_v1_chr18_+_36446680_36446818	2.18949	NANOG{mouse}.2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr10_+_18246228_18246361	2.18656	NANOG{mouse}.2	AK220386|Nhsl1|215819|NHS-like 1	AK134837|Nhsl1|215819|NHS-like 1	AK043447|Nhsl1|215819|NHS-like 1
mm9_v1_chr9_-_21116749_21116776	2.17908	NANOG{mouse}.2	AF067146|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK010478|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK082674|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	NM_001110300|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	NM_009678|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit
mm9_v1_chr8_+_28233019_28233024	2.17851	NANOG{mouse}.2	AK020642|Gpr124|78560|G protein-coupled receptor 124
mm9_v1_chr8_-_8661060_8661191	2.17456	NANOG{mouse}.2	BC057009|Efnb2|13642|ephrin B2	AK132845|Efnb2|13642|ephrin B2
mm9_v1_chr5_+_90890764_90890776	2.15863	NANOG{mouse}.2	AK050644|Alb|11657|albumin
mm9_v1_chr2_+_175964428_175964488	2.15669	NANOG{mouse}.2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr11_+_89894863_89894903	2.14655	NANOG{mouse}.2	BC034841|Tmem100|67888|transmembrane protein 100
mm9_v1_chr17_-_27075896_27076239	2.14334	NANOG{mouse}.2	AK181681|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK187338|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC037500|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC021463|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr2_-_177691943_177692036	2.13502	NANOG{mouse}.2	BC042711|Gm14326|665211|predicted gene 14326	BC079554|Gm14326|665211|predicted gene 14326	NM_001190302|Gm14326|665211|predicted gene 14326
mm9_v1_chr6_-_29559606_29559647	2.13352	NANOG{mouse}.2	BC064646|Tnpo3|320938|transportin 3	NM_177296|Tnpo3|320938|transportin 3	AK145723|Tnpo3|320938|transportin 3	AK045143|Tnpo3|320938|transportin 3
mm9_v1_chr16_+_34994935_34994951	2.12506	NANOG{mouse}.2	AF314149|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr6_-_117887352_117887354	2.1217	NANOG{mouse}.2	AK018728|Fxyd4|108017|FXYD domain-containing ion transport regulator 4	AK054004|Fxyd4|108017|FXYD domain-containing ion transport regulator 4	NM_001173372|Fxyd4|108017|FXYD domain-containing ion transport regulator 4	NM_033648|Fxyd4|108017|FXYD domain-containing ion transport regulator 4
mm9_v1_chr16_-_17928207_17928265	2.11651	NANOG{mouse}.2	AK005070|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	BC037087|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr2_-_166774855_166774859	2.08507	NANOG{mouse}.2	AK177619|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK189331|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)
mm9_v1_chr9_-_56008828_56008912	2.07855	NANOG{mouse}.2	AK159621|Tspan3|56434|tetraspanin 3	AK159324|Tspan3|56434|tetraspanin 3	AK169068|Tspan3|56434|tetraspanin 3	BC043072|Tspan3|56434|tetraspanin 3	AK146130|Tspan3|56434|tetraspanin 3	AK168231|Tspan3|56434|tetraspanin 3	NM_019793|Tspan3|56434|tetraspanin 3
mm9_v1_chr12_-_60112987_60113003	2.03507	NANOG{mouse}.2	BC034610|Sec23a|20334|SEC23A (S. cerevisiae)	NM_009147|Sec23a|20334|SEC23A (S. cerevisiae)
mm9_v1_chr2_-_177813129_177813180	2.03348	NANOG{mouse}.2	NM_001162922|Zfp931|353208|zinc finger protein 931	AK049261|Zfp931|353208|zinc finger protein 931	AK012776|Zfp931|353208|zinc finger protein 931	BC096373|Zfp931|353208|zinc finger protein 931
mm9_v1_chr11_-_116714173_116714405	2.02158	NANOG{mouse}.2	AK204489|Srsf2|20382|serine/arginine-rich splicing factor 2	L13610|Srsf2|20382|serine/arginine-rich splicing factor 2	BC005493|Srsf2|20382|serine/arginine-rich splicing factor 2	AF077858|Srsf2|20382|serine/arginine-rich splicing factor 2	U14648|Srsf2|20382|serine/arginine-rich splicing factor 2	AK161873|Srsf2|20382|serine/arginine-rich splicing factor 2	AK011528|Srsf2|20382|serine/arginine-rich splicing factor 2	AK076448|Srsf2|20382|serine/arginine-rich splicing factor 2	AK086103|Srsf2|20382|serine/arginine-rich splicing factor 2	AK088042|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr17_-_27076365_27076517	2.0158	NANOG{mouse}.2	AK007580|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK007912|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK145185|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC024422|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC028531|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026307|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003381|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026948|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003647|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK004197|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK159336|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK002828|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK012608|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr11_-_69485842_69485924	1.99592	NANOG{mouse}.2	NM_001159375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	NM_144958|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr10_+_127795461_127795537	1.98662	NANOG{mouse}.2	DQ403125|Cs|12974|citrate synthase	AK012104|Cs|12974|citrate synthase
mm9_v1_chr19_-_23522811_23522929	1.9558	NANOG{mouse}.2	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chrX_-_91457942_91457985	1.92038	NANOG{mouse}.2	BC036993|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AJ006587|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
mm9_v1_chr9_+_118716348_118716374	1.91373	NANOG{mouse}.2	BC049939|Itga9|104099|integrin alpha 9
mm9_v1_chr5_+_67067477_67067482	1.90565	NANOG{mouse}.2	AK004066|Uchl1|22223|ubiquitin carboxy-terminal hydrolase L1	AK013729|Uchl1|22223|ubiquitin carboxy-terminal hydrolase L1
mm9_v1_chr10_+_115614313_115614481	1.8987	NANOG{mouse}.2	NM_001161839|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161838|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_001161840|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF041866|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AF129509|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr9_-_21116703_21116742	1.81314	NANOG{mouse}.2	BC003704|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK160161|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit
mm9_v1_chr1_+_120285634_120285634	1.80802	NANOG{mouse}.2	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr10_+_87321789_87322010	1.80801	NANOG{mouse}.2	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chrX_-_140261954_140261960	1.7823	NANOG{mouse}.2	NM_007603|Capn6|12338|calpain 6	AK145116|Capn6|12338|calpain 6
mm9_v1_chr18_+_37849488_37849707	1.77254	NANOG{mouse}.2	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr3_+_94497485_94497530	1.75636	NANOG{mouse}.2	NM_019414|Selenbp2|20342|selenium binding protein 2	S56599|Selenbp2|20342|selenium binding protein 2	BC024106|Selenbp2|20342|selenium binding protein 2
mm9_v1_chr9_-_56008819_56008825	1.75418	NANOG{mouse}.2	AK159418|Tspan3|56434|tetraspanin 3
mm9_v1_chr15_+_97800138_97800260	1.74992	NANOG{mouse}.2	
mm9_v1_chr9_+_106350967_106351018	1.74648	NANOG{mouse}.2	NM_029631|Abhd14b|76491|abhydrolase domain containing 14b	BC019410|Abhd14b|76491|abhydrolase domain containing 14b	AK007469|Abhd14b|76491|abhydrolase domain containing 14b
mm9_v1_chr2_-_174967487_174967557	1.72948	NANOG{mouse}.2	AK166773|Gm14399|100043761|predicted gene 14399
mm9_v1_chr4_+_15211137_15211173	1.72405	NANOG{mouse}.2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr5_+_25265761_25265876	1.72348	NANOG{mouse}.2	BC053106|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	BC082279|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	NM_001004365|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK144936|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK035798|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)
mm9_v1_chr16_-_14291427_14291500	1.72249	NANOG{mouse}.2	S81516|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	L25860|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137226|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85923|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85924|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137716|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK085742|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK173045|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_001161775|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_013607|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle
mm9_v1_chr6_-_124694973_124695025	1.71765	NANOG{mouse}.2	BC022946|Atn1|13498|atrophin 1
mm9_v1_chr2_-_177183009_177183079	1.7155	NANOG{mouse}.2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr10_-_126748678_126748747	1.71425	NANOG{mouse}.2	BC052042|Mars|216443|methionine-tRNA synthetase	BC079643|Mars|216443|methionine-tRNA synthetase	BC058968|Mars|216443|methionine-tRNA synthetase
mm9_v1_chr14_+_29318658_29318741	1.70584	NANOG{mouse}.2	NM_009524|Wnt5a|22418|wingless-related MMTV integration site 5A	AK031597|Wnt5a|22418|wingless-related MMTV integration site 5A	M89798|Wnt5a|22418|wingless-related MMTV integration site 5A
mm9_v1_chr1_-_174128558_174128619	1.70436	NANOG{mouse}.2	BC092079|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr7_-_135073577_135073594	1.70107	NANOG{mouse}.2	AK078696|Prss8|76560|protease, serine, 8 (prostasin)
mm9_v1_chr8_-_28339053_28339060	1.68483	NANOG{mouse}.2	AK143775|Adrb3|11556|adrenergic receptor, beta 3
mm9_v1_chr1_-_72258684_72258880	1.68021	NANOG{mouse}.2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chrX_-_147451785_147451868	1.67515	NANOG{mouse}.2	BC079653|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	BC057033|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	BC020354|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	NM_001168600|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	NM_198110|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like
mm9_v1_chr11_+_20124648_20124793	1.67054	NANOG{mouse}.2	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr2_+_119063134_119063156	1.64709	NANOG{mouse}.2	AF099018|Spint1|20732|serine protease inhibitor, Kunitz type 1
mm9_v1_chr15_-_34608600_34608626	1.59795	NANOG{mouse}.2	AK038556|Nipal2|223473|NIPA-like domain containing 2	BC058207|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr15_+_31498611_31498674	1.58676	NANOG{mouse}.2	BC024580|Cmbl|69574|carboxymethylenebutenolidase-like (Pseudomonas)	NM_181588|Cmbl|69574|carboxymethylenebutenolidase-like (Pseudomonas)
mm9_v1_chr10_+_29033305_29033440	1.58437	NANOG{mouse}.2	NM_025855|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK145162|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK016260|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK166660|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK166589|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK166634|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK028775|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK006444|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	BC066183|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1
mm9_v1_chr8_-_109580565_109580585	1.57905	NANOG{mouse}.2	BC094654|Cog8|97484|component of oligomeric golgi complex 8	AK156186|Cog8|97484|component of oligomeric golgi complex 8	AK159569|Cog8|97484|component of oligomeric golgi complex 8	AK083734|Cog8|97484|component of oligomeric golgi complex 8	AK145727|Cog8|97484|component of oligomeric golgi complex 8	AK153617|Cog8|97484|component of oligomeric golgi complex 8	AK049957|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr17_+_3397206_3397287	1.57544	NANOG{mouse}.2	AB022915|Tiam2|24001|T-cell lymphoma invasion and metastasis 2	NM_011878|Tiam2|24001|T-cell lymphoma invasion and metastasis 2	AK158137|Tiam2|24001|T-cell lymphoma invasion and metastasis 2	AK129474|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr16_-_17928270_17928336	1.56943	NANOG{mouse}.2	AK159289|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	AK170191|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	NM_153150|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr3_+_63100128_63100144	1.56201	NANOG{mouse}.2	AK040730|Mme|17380|membrane metallo endopeptidase	AK080202|Mme|17380|membrane metallo endopeptidase	BC034092|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr6_+_34304098_34304193	1.56067	NANOG{mouse}.2	NM_008012|Akr1b8|14187|aldo-keto reductase family 1, member B8	U04204|Akr1b8|14187|aldo-keto reductase family 1, member B8	BC005789|Akr1b8|14187|aldo-keto reductase family 1, member B8
mm9_v1_chr19_+_8994860_8994941	1.54793	NANOG{mouse}.2	AK144402|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	BC004038|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	NM_024256|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	AK048428|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	BC012930|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	AK140424|B3gat3|72727|beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
mm9_v1_chr4_-_53156928_53156953	1.53335	NANOG{mouse}.2	X75926|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr3_+_98084352_98084426	1.50713	NANOG{mouse}.2	NM_008256|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004865|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004902|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK098104|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC014714|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC024744|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm9_v1_chr5_-_134718500_134718616	1.50589	NANOG{mouse}.2	AK183312|Gtf2i|14886|general transcription factor II I	AK211276|Gtf2i|14886|general transcription factor II I
mm9_v1_chr7_-_67149962_67150045	1.49488	NANOG{mouse}.2	BC069894|Snrpn|20646|small nuclear ribonucleoprotein N	BC024880|Snrpn|20646|small nuclear ribonucleoprotein N	BC019589|Snrpn|20646|small nuclear ribonucleoprotein N	BC132082|Snurf|84704|SNRPN upstream reading frame	BC132084|Snurf|84704|SNRPN upstream reading frame	AK013607|Snrpn|20646|small nuclear ribonucleoprotein N	AK144386|Snrpn|20646|small nuclear ribonucleoprotein N	AF101042|Snurf|84704|SNRPN upstream reading frame	NM_013670|Snrpn|20646|small nuclear ribonucleoprotein N	NM_033174|Snurf|84704|SNRPN upstream reading frame
mm9_v1_chr4_-_134828503_134828682	1.4876	NANOG{mouse}.2	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr10_+_59762775_59763004	1.47559	NANOG{mouse}.2	AK186115|Psap|19156|prosaposin	AK178975|Psap|19156|prosaposin
mm9_v1_chr2_+_175868350_175868436	1.47067	NANOG{mouse}.2	AK013921|Gm6710|626832|predicted gene 6710	AK013829|Gm14391|665001|predicted gene 14391	NM_001099308|Gm14391|665001|predicted gene 14391	NM_001177480|Gm14391|665001|predicted gene 14391	NM_001164689|Gm6710|626832|predicted gene 6710	AK169456|Gm14391|665001|predicted gene 14391	U62393|Gm6710|626832|predicted gene 6710
mm9_v1_chr2_-_175032305_175032443	1.4667	NANOG{mouse}.2	BC086920|Gm6710|626832|predicted gene 6710	U62393|Gm6710|626832|predicted gene 6710	AK169456|Gm14391|665001|predicted gene 14391	NM_001164689|Gm6710|626832|predicted gene 6710	AK013829|Gm14391|665001|predicted gene 14391	NM_001099308|Gm14391|665001|predicted gene 14391	NM_001177480|Gm14391|665001|predicted gene 14391	AK013921|Gm6710|626832|predicted gene 6710
mm9_v1_chr1_-_155698278_155698324	1.46199	NANOG{mouse}.2	BC120491|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	BC131905|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AJ554213|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136655|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	AK136685|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	DQ402363|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene	NM_178243|5830403L16Rik|240817|RIKEN cDNA 5830403L16 gene
mm9_v1_chr3_+_129584101_129584101	1.46131	NANOG{mouse}.2	AY007382|Pla2g12a|66350|phospholipase A2, group XIIA	NM_183423|Pla2g12a|66350|phospholipase A2, group XIIA
mm9_v1_chr9_-_99287199_99287315	1.45606	NANOG{mouse}.2	AK013800|Mras|17532|muscle and microspikes RAS
mm9_v1_chr17_+_86567003_86567165	1.45335	NANOG{mouse}.2	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr17_-_57367499_57367520	1.44686	NANOG{mouse}.2	BC043338|C3|12266|complement component 3	K02782|C3|12266|complement component 3
mm9_v1_chr11_-_31571811_31571918	1.43985	NANOG{mouse}.2	NM_001024919|Bod1|69556|biorientation of chromosomes in cell division 1	BC116435|Bod1|69556|biorientation of chromosomes in cell division 1	BC116436|Bod1|69556|biorientation of chromosomes in cell division 1	BC128508|Bod1|69556|biorientation of chromosomes in cell division 1	BC128509|Bod1|69556|biorientation of chromosomes in cell division 1
mm9_v1_chr5_-_76374399_76374520	1.438	NANOG{mouse}.2	X59397|Kdr|16542|kinase insert domain protein receptor	BC020530|Kdr|16542|kinase insert domain protein receptor	NM_010612|Kdr|16542|kinase insert domain protein receptor	S53103|Kdr|16542|kinase insert domain protein receptor	AK141938|Kdr|16542|kinase insert domain protein receptor	EU884114|Kdr|16542|kinase insert domain protein receptor	AK054510|Kdr|16542|kinase insert domain protein receptor
mm9_v1_chr5_+_36546669_36546706	1.434	NANOG{mouse}.2	NM_175249|Psapl1|76943|prosaposin-like 1	AK028455|Psapl1|76943|prosaposin-like 1	AK078699|Psapl1|76943|prosaposin-like 1	BC119540|Psapl1|76943|prosaposin-like 1	BC148306|Psapl1|76943|prosaposin-like 1
mm9_v1_chr3_+_89225539_89225564	1.43361	NANOG{mouse}.2	NM_001113331|Shc1|20416|src homology 2 domain-containing transforming protein C1	AK155158|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr6_+_145882641_145882808	1.43319	NANOG{mouse}.2	AK162864|Sspn|16651|sarcospan	AK163041|Sspn|16651|sarcospan	AK164430|Sspn|16651|sarcospan	BC021484|Sspn|16651|sarcospan	NM_010656|Sspn|16651|sarcospan	U02487|Sspn|16651|sarcospan	AK148179|Sspn|16651|sarcospan	AK164529|Sspn|16651|sarcospan
mm9_v1_chrX_-_133276147_133276147	1.43212	NANOG{mouse}.2	BC075653|Morf4l2|56397|mortality factor 4 like 2	NM_019768|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr8_+_120225803_120225850	1.43198	NANOG{mouse}.2	Y09517|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	AK004950|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	NM_008290|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2
mm9_v1_chr15_+_99239550_99239559	1.42077	NANOG{mouse}.2	BC018591|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chrX_-_91457986_91458033	1.41245	NANOG{mouse}.2	AK128949|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK171317|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	BC063755|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	BC139234|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	BC139235|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	NM_012010|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK165866|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK150095|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	AK146900|Eif2s3x|26905|eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked
mm9_v1_chr6_+_65728933_65728994	1.41194	NANOG{mouse}.2	NM_027547|Prdm5|70779|PR domain containing 5	BC138901|Prdm5|70779|PR domain containing 5	BC138902|Prdm5|70779|PR domain containing 5
mm9_v1_chr11_-_94335350_94335511	1.40878	NANOG{mouse}.2	BC057399|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001112813|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177888|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177890|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_009783|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm9_v1_chr5_+_64203602_64203733	1.40745	NANOG{mouse}.2	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chrX_+_140127827_140127856	1.39853	NANOG{mouse}.2	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr4_-_57928618_57928638	1.39639	NANOG{mouse}.2	AK033446|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene
mm9_v1_chr10_+_115254308_115254566	1.3913	NANOG{mouse}.2	AK087696|Tspan8|216350|tetraspanin 8	AK077301|Tspan8|216350|tetraspanin 8	BC027777|Tspan8|216350|tetraspanin 8	BC029808|Tspan8|216350|tetraspanin 8	NM_001168679|Tspan8|216350|tetraspanin 8	NM_001168680|Tspan8|216350|tetraspanin 8	NM_146010|Tspan8|216350|tetraspanin 8	BC029068|Tspan8|216350|tetraspanin 8	BC025461|Tspan8|216350|tetraspanin 8	BC034198|Tspan8|216350|tetraspanin 8
mm9_v1_chr10_-_80522871_80522963	1.3899	NANOG{mouse}.2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr10_-_60610398_60610452	1.37168	NANOG{mouse}.2	NM_009163|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr5_+_135408221_135408290	1.37055	NANOG{mouse}.2	AY138964|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354925|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354926|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354927|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	NM_024479|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK042578|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK132481|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK081683|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	BC002286|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)
mm9_v1_chr2_+_131059825_131059889	1.33804	NANOG{mouse}.2	BC020006|Mavs|228607|mitochondrial antiviral signaling protein	AK085038|Mavs|228607|mitochondrial antiviral signaling protein	BC025825|Mavs|228607|mitochondrial antiviral signaling protein	NM_144888|Mavs|228607|mitochondrial antiviral signaling protein	BC031352|Mavs|228607|mitochondrial antiviral signaling protein
mm9_v1_chr16_+_25286902_25286906	1.32499	NANOG{mouse}.2	AK036796|Tprg|71338|transformation related protein 63 regulated	NM_175165|Tprg|71338|transformation related protein 63 regulated	AK017323|Tprg|71338|transformation related protein 63 regulated
mm9_v1_chr3_+_67178037_67178091	1.31883	NANOG{mouse}.2	BC027526|Mlf1|17349|myeloid leukemia factor 1	AF100171|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr12_-_112615921_112615933	1.31773	NANOG{mouse}.2	NM_183016|Cdc42bpb|217866|CDC42 binding protein kinase beta
mm9_v1_chr16_+_20672854_20672888	1.31722	NANOG{mouse}.2	AK053144|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK142399|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK133903|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK139371|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK162698|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066038|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr2_+_163646545_163646658	1.31122	NANOG{mouse}.2	NM_016873|Wisp2|22403|WNT1 inducible signaling pathway protein 2	AF100778|Wisp2|22403|WNT1 inducible signaling pathway protein 2	AF126063|Wisp2|22403|WNT1 inducible signaling pathway protein 2	BC032877|Wisp2|22403|WNT1 inducible signaling pathway protein 2
mm9_v1_chr9_-_119835967_119836242	1.30087	NANOG{mouse}.2	AK198424|Gorasp1|74498|golgi reassembly stacking protein 1	AK209806|Gorasp1|74498|golgi reassembly stacking protein 1	AK213744|Gorasp1|74498|golgi reassembly stacking protein 1	AK204247|Gorasp1|74498|golgi reassembly stacking protein 1
mm9_v1_chr2_+_32251409_32251409	1.29995	NANOG{mouse}.2	NM_133783|Ptges2|96979|prostaglandin E synthase 2
mm9_v1_chr11_-_60040448_60040491	1.29654	NANOG{mouse}.2	AK013538|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr4_-_128925666_128925738	1.2929	NANOG{mouse}.2	AK154932|C77080|97130|expressed sequence C77080	NM_001033189|C77080|97130|expressed sequence C77080
mm9_v1_chr9_-_21314605_21314677	1.29046	NANOG{mouse}.2	U41805|Tmed1|17083|transmembrane emp24 domain containing 1	BC006715|Tmed1|17083|transmembrane emp24 domain containing 1	AK133513|Tmed1|17083|transmembrane emp24 domain containing 1	AK166092|Tmed1|17083|transmembrane emp24 domain containing 1	NM_010744|Tmed1|17083|transmembrane emp24 domain containing 1	AK160525|Tmed1|17083|transmembrane emp24 domain containing 1	BC016568|Tmed1|17083|transmembrane emp24 domain containing 1	BC138499|Tmed1|17083|transmembrane emp24 domain containing 1	BC138498|Tmed1|17083|transmembrane emp24 domain containing 1	BC145298|Tmed1|17083|transmembrane emp24 domain containing 1
mm9_v1_chr11_+_102465684_102465793	1.28849	NANOG{mouse}.2	NM_020510|Fzd2|57265|frizzled homolog 2 (Drosophila)	BC055727|Fzd2|57265|frizzled homolog 2 (Drosophila)	AK048420|Fzd2|57265|frizzled homolog 2 (Drosophila)	AK135363|Fzd2|57265|frizzled homolog 2 (Drosophila)
mm9_v1_chr10_+_76731607_76731785	1.28584	NANOG{mouse}.2	AK218752|Pofut2|80294|protein O-fucosyltransferase 2	AK206420|Pofut2|80294|protein O-fucosyltransferase 2
mm9_v1_chr19_-_6141100_6141219	1.28505	NANOG{mouse}.2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr7_-_135073600_135073612	1.28428	NANOG{mouse}.2	BC003851|Prss8|76560|protease, serine, 8 (prostasin)	AB038244|Prss8|76560|protease, serine, 8 (prostasin)
mm9_v1_chr4_-_11313886_11313929	1.28033	NANOG{mouse}.2	AK140848|Esrp1|207920|epithelial splicing regulatory protein 1	NM_194055|Esrp1|207920|epithelial splicing regulatory protein 1
mm9_v1_chr8_-_81345034_81345050	1.2728	NANOG{mouse}.2	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr18_+_20823750_20823857	1.26033	NANOG{mouse}.2	NM_013697|Ttr|22139|transthyretin	BC024702|Ttr|22139|transthyretin
mm9_v1_chr2_+_109514856_109514856	1.25417	NANOG{mouse}.2	AY057908|Bdnf|12064|brain derived neurotrophic factor	EF125669|Bdnf|12064|brain derived neurotrophic factor	NM_007540|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr2_-_120139738_120139900	1.24771	NANOG{mouse}.2	BC039947|Pla2g4f|271844|phospholipase A2, group IVF	BC145426|Pla2g4f|271844|phospholipase A2, group IVF	BC145427|Pla2g4f|271844|phospholipase A2, group IVF	BC145428|Pla2g4f|271844|phospholipase A2, group IVF	BC150771|Pla2g4f|271844|phospholipase A2, group IVF	AB195278|Pla2g4f|271844|phospholipase A2, group IVF	DQ904008|Pla2g4f|271844|phospholipase A2, group IVF	NM_001024145|Pla2g4f|271844|phospholipase A2, group IVF
mm9_v1_chr11_+_3883638_3883715	1.24247	NANOG{mouse}.2	AK007645|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_001177703|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_016922|Gal3st1|53897|galactose-3-O-sulfotransferase 1	BC026806|Gal3st1|53897|galactose-3-O-sulfotransferase 1
mm9_v1_chrX_-_133275812_133275890	1.24135	NANOG{mouse}.2	AK089963|Morf4l2|56397|mortality factor 4 like 2	AK153146|Morf4l2|56397|mortality factor 4 like 2	AK075946|Morf4l2|56397|mortality factor 4 like 2	AK131944|Morf4l2|56397|mortality factor 4 like 2	AK145686|Morf4l2|56397|mortality factor 4 like 2	AK150401|Morf4l2|56397|mortality factor 4 like 2	AK150670|Morf4l2|56397|mortality factor 4 like 2	AK151570|Morf4l2|56397|mortality factor 4 like 2	AK159179|Morf4l2|56397|mortality factor 4 like 2	AK160012|Morf4l2|56397|mortality factor 4 like 2	AK164433|Morf4l2|56397|mortality factor 4 like 2	AK165985|Morf4l2|56397|mortality factor 4 like 2	AK159145|Morf4l2|56397|mortality factor 4 like 2	NM_001168226|Morf4l2|56397|mortality factor 4 like 2	NM_001168229|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr2_+_26442112_26442158	1.23105	NANOG{mouse}.2	NM_001164564|Egfl7|353156|EGF-like domain 7	AK139377|Egfl7|353156|EGF-like domain 7
mm9_v1_chr9_+_56266415_56266485	1.2232	NANOG{mouse}.2	AK017716|Hmg20a|66867|high mobility group 20A	AK129010|Hmg20a|66867|high mobility group 20A	AK134213|Hmg20a|66867|high mobility group 20A
mm9_v1_chr4_+_114761312_114761366	1.22091	NANOG{mouse}.2	NM_001164557|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_001164558|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_026018|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK007936|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK008253|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK012305|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr11_+_102466556_102466714	1.21117	NANOG{mouse}.2	AF139183|Fzd2|57265|frizzled homolog 2 (Drosophila)	AF206322|Fzd2|57265|frizzled homolog 2 (Drosophila)
mm9_v1_chr3_+_104591955_104591985	1.21054	NANOG{mouse}.2	AK160650|Rhoc|11853|ras homolog gene family, member C	X80638|Rhoc|11853|ras homolog gene family, member C	BC004627|Rhoc|11853|ras homolog gene family, member C
mm9_v1_chr8_-_81344956_81345026	1.2003	NANOG{mouse}.2	BC099484|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC098230|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC030427|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK141884|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK078392|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK161686|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK019126|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr13_-_35118959_35118964	1.19751	NANOG{mouse}.2	
mm9_v1_chr12_-_104970796_104970805	1.17122	NANOG{mouse}.2	M25529|Serpina1b|20701|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm9_v1_chr16_+_20672847_20672848	1.17087	NANOG{mouse}.2	AK134557|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr17_-_24670527_24670832	1.16804	NANOG{mouse}.2	AB232621|Rab26|328778|RAB26, member RAS oncogene family	BC094931|Rab26|328778|RAB26, member RAS oncogene family	AK043912|Rab26|328778|RAB26, member RAS oncogene family	AK080607|Rab26|328778|RAB26, member RAS oncogene family	NM_177375|Rab26|328778|RAB26, member RAS oncogene family	BC118018|Rab26|328778|RAB26, member RAS oncogene family
mm9_v1_chr15_+_34236408_34236565	1.16566	NANOG{mouse}.2	AK035102|Matn2|17181|matrilin 2	NM_016762|Matn2|17181|matrilin 2	AK083151|Matn2|17181|matrilin 2	AK138211|Matn2|17181|matrilin 2	U69262|Matn2|17181|matrilin 2	AK163818|Matn2|17181|matrilin 2	AK081339|Matn2|17181|matrilin 2	BC092298|Matn2|17181|matrilin 2	BC005429|Matn2|17181|matrilin 2
mm9_v1_chr14_-_123382275_123382482	1.16448	NANOG{mouse}.2	AK043293|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK049748|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK039093|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK044391|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK036741|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK045271|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK028333|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	AK033947|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4	NM_028651|Tmtc4|70551|transmembrane and tetratricopeptide repeat containing 4
mm9_v1_chr8_+_22887026_22887070	1.16409	NANOG{mouse}.2	NM_007843|Defb1|13214|defensin beta 1	AK142544|Defb1|13214|defensin beta 1	BC024380|Defb1|13214|defensin beta 1
mm9_v1_chr9_-_105372402_105372478	1.15135	NANOG{mouse}.2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr9_-_56008770_56008818	1.14741	NANOG{mouse}.2	AK159914|Tspan3|56434|tetraspanin 3
mm9_v1_chr9_-_115219520_115219538	1.14056	NANOG{mouse}.2	BC052433|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	NM_024222|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chrX_-_132602648_132602774	1.13595	NANOG{mouse}.2	AF097439|Bex2|12069|brain expressed X-linked 2	BC027529|Bex2|12069|brain expressed X-linked 2	AK132005|Bex2|12069|brain expressed X-linked 2	NM_009749|Bex2|12069|brain expressed X-linked 2
mm9_v1_chr11_+_69435553_69435610	1.13244	NANOG{mouse}.2	AK011406|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	AK161230|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	BC061227|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	NM_026991|Sat2|69215|spermidine/spermine N1-acetyl transferase 2
mm9_v1_chr2_+_174155506_174155512	1.13022	NANOG{mouse}.2	BC034446|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr13_-_115892027_115892148	1.11207	NANOG{mouse}.2	BC014765|Itga1|109700|integrin alpha 1	AK169964|Itga1|109700|integrin alpha 1	AK029105|Itga1|109700|integrin alpha 1	AK043769|Itga1|109700|integrin alpha 1	AK077286|Pelo|105083|pelota homolog (Drosophila)	AK141204|Itga1|109700|integrin alpha 1
mm9_v1_chr1_+_87804349_87804399	1.0993	NANOG{mouse}.2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr8_+_73051625_73051647	1.09808	NANOG{mouse}.2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr13_+_40955500_40955723	1.09436	NANOG{mouse}.2	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr6_+_71657791_71657963	1.09306	NANOG{mouse}.2	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr2_-_6110280_6110381	1.09128	NANOG{mouse}.2	AK209830|Echdc3|67856|enoyl Coenzyme A hydratase domain containing 3
mm9_v1_chr17_+_43938789_43938843	1.07105	NANOG{mouse}.2	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr5_+_64203750_64203816	1.06829	NANOG{mouse}.2	AK159779|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	BC004797|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr6_-_97262013_97262028	1.06553	NANOG{mouse}.2	BC058262|Frmd4b|232288|FERM domain containing 4B
mm9_v1_chr9_+_56266618_56266679	1.06267	NANOG{mouse}.2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr16_+_20672890_20672931	1.06032	NANOG{mouse}.2	AK150050|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066103|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC079675|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr19_+_42056244_42056262	1.05001	NANOG{mouse}.2	NM_145500|Ubtd1|226122|ubiquitin domain containing 1	AK078479|Ubtd1|226122|ubiquitin domain containing 1
mm9_v1_chr9_+_54798578_54798680	1.04265	NANOG{mouse}.2	AK168838|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK085937|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK150565|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK166618|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AK168150|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	BC001982|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	NM_011966|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4	AF060093|Psma4|26441|proteasome (prosome, macropain) subunit, alpha type 4
mm9_v1_chr7_+_148401731_148401771	1.03452	NANOG{mouse}.2	AK010305|Rassf7|66985|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	NM_025886|Rassf7|66985|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm9_v1_chr1_+_90034940_90035048	1.02879	NANOG{mouse}.2	AY227197|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	U09930|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A	D87867|Ugt1a6a|94284|UDP glucuronosyltransferase 1 family, polypeptide A6A
mm9_v1_chr5_-_144288771_144288810	1.02534	NANOG{mouse}.2	X57277|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr13_+_113254277_113254381	1.02267	NANOG{mouse}.2	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr3_+_63100101_63100109	1.02005	NANOG{mouse}.2	AK033824|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr3_+_67178016_67178018	1.0185	NANOG{mouse}.2	AK007292|Mlf1|17349|myeloid leukemia factor 1	AK133448|Mlf1|17349|myeloid leukemia factor 1	NM_001039543|Mlf1|17349|myeloid leukemia factor 1	NM_010801|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr14_+_63761085_63761315	1.01223	NANOG{mouse}.2	X54966|Ctsb|13030|cathepsin B
mm9_v1_chr4_-_148681792_148681843	1.00934	NANOG{mouse}.2	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr16_+_55966387_55966447	1.00643	NANOG{mouse}.2	NM_024218|Rpl24|68193|ribosomal protein L24
mm9_v1_chr8_-_97958656_97958727	0.995264	NANOG{mouse}.2	BC092397|Gtl3|14894|gene trap locus 3	BC119023|Gtl3|14894|gene trap locus 3	BC119025|Gtl3|14894|gene trap locus 3	BC144770|Gtl3|14894|gene trap locus 3	AK088713|Gtl3|14894|gene trap locus 3	Z54179|Gtl3|14894|gene trap locus 3	AK011217|Gtl3|14894|gene trap locus 3
mm9_v1_chr2_+_177493957_177493997	0.99521	NANOG{mouse}.2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr15_-_89422293_89422353	0.991791	NANOG{mouse}.2	AK170205|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK004012|Rabl2|68708|RAB, member of RAS oncogene family-like 2	BC030376|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK051232|Rabl2|68708|RAB, member of RAS oncogene family-like 2	NM_026817|Rabl2|68708|RAB, member of RAS oncogene family-like 2
mm9_v1_chr17_+_43804373_43804482	0.990732	NANOG{mouse}.2	AK031733|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	NM_018887|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC021418|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	AF237981|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1	BC037663|Cyp39a1|56050|cytochrome P450, family 39, subfamily a, polypeptide 1
mm9_v1_chrX_+_136219520_136219539	0.986768	NANOG{mouse}.2	NM_001081499|Tbc1d8b|245638|TBC1 domain family, member 8B
mm9_v1_chr3_-_98663713_98663719	0.971334	NANOG{mouse}.2	AK146665|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	AK147114|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	NM_008293|Hsd3b1|15492|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1
mm9_v1_chr11_-_69485800_69485832	0.965555	NANOG{mouse}.2	BC099392|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC012282|Eif4a1|13681|eukaryotic translation initiation factor 4A1	BC049915|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169030|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166527|Eif4a1|13681|eukaryotic translation initiation factor 4A1	X03039|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK159643|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167205|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168697|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169156|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK011529|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK077429|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135752|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK135994|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK144850|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146464|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166439|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167003|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167083|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167988|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK168780|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169023|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169057|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK169279|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166572|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK088124|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145375|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK145508|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK146424|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK152694|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK162017|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK166674|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167196|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK167906|Eif4a1|13681|eukaryotic translation initiation factor 4A1	AK010644|Eif4a1|13681|eukaryotic translation initiation factor 4A1
mm9_v1_chr10_+_80847168_80847285	0.965289	NANOG{mouse}.2	AK154104|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	NM_133964|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	AK004052|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	AK080664|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	BC002295|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase
mm9_v1_chr8_+_12984287_12984308	0.927153	NANOG{mouse}.2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr16_+_6349108_6349144	0.923222	NANOG{mouse}.2	AK134833|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr11_+_87394543_87394570	0.916709	NANOG{mouse}.2	AK135143|Sept4|18952|septin 4	BC055101|Sept4|18952|septin 4	BC037673|Sept4|18952|septin 4
mm9_v1_chr11_+_66915650_66915669	0.911989	NANOG{mouse}.2	
mm9_v1_chr17_+_46818005_46818130	0.911233	NANOG{mouse}.2	AK010863|Mea1|17256|male enhanced antigen 1	AK008305|Mea1|17256|male enhanced antigen 1	AK008194|Mea1|17256|male enhanced antigen 1	AK010904|Mea1|17256|male enhanced antigen 1	AK010962|Mea1|17256|male enhanced antigen 1	AK012617|Mea1|17256|male enhanced antigen 1	AK005369|Mea1|17256|male enhanced antigen 1	AK005106|Mea1|17256|male enhanced antigen 1	L10401|Mea1|17256|male enhanced antigen 1	M27938|Mea1|17256|male enhanced antigen 1	NM_010787|Mea1|17256|male enhanced antigen 1	AK011189|Mea1|17256|male enhanced antigen 1	D17341|Mea1|17256|male enhanced antigen 1
mm9_v1_chr17_-_79135885_79135936	0.909735	NANOG{mouse}.2	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr2_-_84316891_84316933	0.894358	NANOG{mouse}.2	BC036146|Tfpi|21788|tissue factor pathway inhibitor	NM_001177319|Tfpi|21788|tissue factor pathway inhibitor	AK034752|Tfpi|21788|tissue factor pathway inhibitor	NM_001177320|Tfpi|21788|tissue factor pathway inhibitor
mm9_v1_chr19_+_6276885_6276962	0.878373	NANOG{mouse}.2	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chr14_-_54873524_54873603	0.873647	NANOG{mouse}.2	BC053379|Dad1|13135|defender against cell death 1	AK006711|Dad1|13135|defender against cell death 1	BC024378|Dad1|13135|defender against cell death 1	AK054480|Dad1|13135|defender against cell death 1	U83628|Dad1|13135|defender against cell death 1	AK030925|Dad1|13135|defender against cell death 1	BC058116|Dad1|13135|defender against cell death 1	AK002446|Dad1|13135|defender against cell death 1	NM_001113358|Dad1|13135|defender against cell death 1	NM_010015|Dad1|13135|defender against cell death 1
mm9_v1_chr5_-_144288868_144288935	0.872199	NANOG{mouse}.2	AK088825|Rac1|19353|RAS-related C3 botulinum substrate 1	AK076023|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr9_-_58388489_58388746	0.861711	NANOG{mouse}.2	AK031354|Cd276|102657|CD276 antigen	AY190318|Cd276|102657|CD276 antigen	BC019436|Cd276|102657|CD276 antigen	BC056608|Cd276|102657|CD276 antigen	NM_133983|Cd276|102657|CD276 antigen
mm9_v1_chr7_+_148021503_148021519	0.858188	NANOG{mouse}.2	DQ225768|1190003J15Rik|76974|RIKEN cDNA 1190003J15 gene
mm9_v1_chr11_-_121215559_121215772	0.853432	NANOG{mouse}.2	AK182151|Wdr45l|66840|Wdr45 like	AK189483|Wdr45l|66840|Wdr45 like	AK215641|Wdr45l|66840|Wdr45 like	BC004595|Wdr45l|66840|Wdr45 like	AK170602|Wdr45l|66840|Wdr45 like	AK013170|Wdr45l|66840|Wdr45 like	AK086235|Wdr45l|66840|Wdr45 like	AK168603|Wdr45l|66840|Wdr45 like	AK151975|Wdr45l|66840|Wdr45 like	AK002352|Wdr45l|66840|Wdr45 like	AK146101|Wdr45l|66840|Wdr45 like	NM_025793|Wdr45l|66840|Wdr45 like
mm9_v1_chr7_-_149088233_149088349	0.852967	NANOG{mouse}.2	AK049394|Tollip|54473|toll interacting protein	BC062139|Tollip|54473|toll interacting protein	AK045422|Tollip|54473|toll interacting protein	BC053515|Tollip|54473|toll interacting protein	AK161312|Tollip|54473|toll interacting protein	AJ242971|Tollip|54473|toll interacting protein	AK016482|Tollip|54473|toll interacting protein	NM_023764|Tollip|54473|toll interacting protein	AK078391|Tollip|54473|toll interacting protein	AK049263|Tollip|54473|toll interacting protein
mm9_v1_chr8_+_73051900_73051908	0.849487	NANOG{mouse}.2	AK040736|Fkbp8|14232|FK506 binding protein 8	AK088739|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr3_-_36374572_36374652	0.848234	NANOG{mouse}.2	AK153476|Anxa5|11747|annexin A5	BC003716|Anxa5|11747|annexin A5	AK147740|Anxa5|11747|annexin A5	AK153388|Anxa5|11747|annexin A5	AK152185|Anxa5|11747|annexin A5
mm9_v1_chr13_-_69750195_69750231	0.841695	NANOG{mouse}.2	BC115468|Srd5a1|78925|steroid 5 alpha-reductase 1	BC115469|Srd5a1|78925|steroid 5 alpha-reductase 1	AK082819|Srd5a1|78925|steroid 5 alpha-reductase 1
mm9_v1_chr1_+_55145132_55145232	0.839646	NANOG{mouse}.2	AK088121|Hspe1|15528|heat shock protein 1 (chaperonin 10)	U09659|Hspe1|15528|heat shock protein 1 (chaperonin 10)	BC099385|Hspe1|15528|heat shock protein 1 (chaperonin 10)	AK151935|Hspe1|15528|heat shock protein 1 (chaperonin 10)	AK133876|Hspe1|15528|heat shock protein 1 (chaperonin 10)	BC024385|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr9_-_60535274_60535340	0.839186	NANOG{mouse}.2	AK051325|Lrrc49|102747|leucine rich repeat containing 49	NM_001146047|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr2_-_26459710_26459746	0.830849	NANOG{mouse}.2	AY072769|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	NM_026212|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	AK010891|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
mm9_v1_chr3_+_90024723_90024820	0.823724	NANOG{mouse}.2	AK002303|Rab13|68328|RAB13, member RAS oncogene family	NM_026677|Rab13|68328|RAB13, member RAS oncogene family	AB232608|Rab13|68328|RAB13, member RAS oncogene family
mm9_v1_chr8_+_73051651_73051898	0.818455	NANOG{mouse}.2	AK167663|Fkbp8|14232|FK506 binding protein 8	AK158155|Fkbp8|14232|FK506 binding protein 8	AY278608|Fkbp8|14232|FK506 binding protein 8	BC027808|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr4_+_125181288_125181474	0.804204	NANOG{mouse}.2	NM_008049|Ftl2|14337|ferritin light chain 2	AK145265|Ftl1|14325|ferritin light chain 1	AK213945|Gm15590|100270751|ferritin light chain 1 pseudogene	BC106145|Ftl1|14325|ferritin light chain 1	BC150761|Ftl2|14337|ferritin light chain 2	S89400|Ftl2|14337|ferritin light chain 2
mm9_v1_chrX_-_140261831_140261910	0.802437	NANOG{mouse}.2	BC052167|Capn6|12338|calpain 6	Y12582|Capn6|12338|calpain 6	AK048028|Capn6|12338|calpain 6
mm9_v1_chr8_+_73051648_73051650	0.798184	NANOG{mouse}.2	AK153000|Fkbp8|14232|FK506 binding protein 8	AK165281|Fkbp8|14232|FK506 binding protein 8	AK146122|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr5_+_130090042_130090115	0.797466	NANOG{mouse}.2	BC051917|Mmp17|23948|matrix metallopeptidase 17	NM_011846|Mmp17|23948|matrix metallopeptidase 17	AB021224|Mmp17|23948|matrix metallopeptidase 17	AK143521|Mmp17|23948|matrix metallopeptidase 17	AJ010731|Mmp17|23948|matrix metallopeptidase 17
mm9_v1_chr3_+_121948693_121948990	0.796244	NANOG{mouse}.2	U95053|Gclm|14630|glutamate-cysteine ligase, modifier subunit	CT010256|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK176933|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK184377|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr11_+_94189303_94189504	0.79531	NANOG{mouse}.2	NM_027799|Ankrd40|71452|ankyrin repeat domain 40	NM_146024|Ankrd40|71452|ankyrin repeat domain 40	BC023133|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr14_-_9211250_9211282	0.782276	NANOG{mouse}.2	AK009397|Oit1|18300|oncoprotein induced transcript 1	AK010206|Oit1|18300|oncoprotein induced transcript 1	BC024504|Oit1|18300|oncoprotein induced transcript 1	BC024542|Oit1|18300|oncoprotein induced transcript 1	BC034193|Oit1|18300|oncoprotein induced transcript 1	NM_146050|Oit1|18300|oncoprotein induced transcript 1
mm9_v1_chr7_+_151009071_151009071	0.781365	NANOG{mouse}.2	AJ307059|Dhcr7|13360|7-dehydrocholesterol reductase	NM_007856|Dhcr7|13360|7-dehydrocholesterol reductase
mm9_v1_chr2_+_131059782_131059822	0.779405	NANOG{mouse}.2	AK161823|Mavs|228607|mitochondrial antiviral signaling protein	AK153748|Mavs|228607|mitochondrial antiviral signaling protein	AK028421|Mavs|228607|mitochondrial antiviral signaling protein	AK028708|Mavs|228607|mitochondrial antiviral signaling protein	AX775773|Mavs|228607|mitochondrial antiviral signaling protein
mm9_v1_chr1_+_44200032_44200079	0.77804	NANOG{mouse}.2	AK088931|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chrX_-_101176600_101176631	0.778038	NANOG{mouse}.2	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr11_-_116713389_116713469	0.775521	NANOG{mouse}.2	AF250132|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr9_-_103965323_103965336	0.767199	NANOG{mouse}.2	BC019764|Uba5|66663|ubiquitin-like modifier activating enzyme 5
mm9_v1_chr11_+_120358702_120358712	0.76658	NANOG{mouse}.2	
mm9_v1_chrX_-_7318412_7318449	0.759194	NANOG{mouse}.2	BC053918|Ccdc120|54648|coiled-coil domain containing 120	NM_207202|Ccdc120|54648|coiled-coil domain containing 120
mm9_v1_chr12_-_105392063_105392090	0.755497	NANOG{mouse}.2	BC116724|Serpina3c|16625|serine (or cysteine) peptidase inhibitor, clade A, member 3C	NM_008458|Serpina3c|16625|serine (or cysteine) peptidase inhibitor, clade A, member 3C
mm9_v1_chr16_+_48310386_48310386	0.75268	NANOG{mouse}.2	AY561246|Dppa2|73703|developmental pluripotency associated 2	NM_028615|Dppa2|73703|developmental pluripotency associated 2
mm9_v1_chr9_-_103965405_103965479	0.751193	NANOG{mouse}.2	AK151823|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK077825|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK168907|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK152029|Uba5|66663|ubiquitin-like modifier activating enzyme 5	AK017787|Uba5|66663|ubiquitin-like modifier activating enzyme 5	NM_025692|Uba5|66663|ubiquitin-like modifier activating enzyme 5
mm9_v1_chr5_-_76733770_76733829	0.746218	NANOG{mouse}.2	AK030352|Clock|12753|circadian locomotor output cycles kaput	AK040337|Clock|12753|circadian locomotor output cycles kaput	AK041303|Clock|12753|circadian locomotor output cycles kaput	AK140803|LOC620729|620729|hypothetical protein LOC620729	AK158765|Clock|12753|circadian locomotor output cycles kaput	AK129118|Clock|12753|circadian locomotor output cycles kaput
mm9_v1_chr12_+_73885063_73885417	0.746159	NANOG{mouse}.2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr9_-_78194951_78194960	0.742133	NANOG{mouse}.2	J03958|Gsta2|14858|glutathione S-transferase, alpha 2 (Yc2)	NM_008182|Gsta2|14858|glutathione S-transferase, alpha 2 (Yc2)	AK002712|Gsta2|14858|glutathione S-transferase, alpha 2 (Yc2)
mm9_v1_chrX_+_138662479_138662479	0.741758	NANOG{mouse}.2	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr3_-_36374739_36374822	0.739262	NANOG{mouse}.2	NM_009673|Anxa5|11747|annexin A5
mm9_v1_chr17_-_25922267_25922279	0.737124	NANOG{mouse}.2	AK005274|Haghl|68977|hydroxyacylglutathione hydrolase-like	NM_026897|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK079632|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr19_-_4007587_4007601	0.730781	NANOG{mouse}.2	
mm9_v1_chr13_+_23830671_23830686	0.723138	NANOG{mouse}.2	AK155502|Hist1h1c|50708|histone cluster 1, H1c	BC089604|Hist1h1c|50708|histone cluster 1, H1c	NM_015786|Hist1h1c|50708|histone cluster 1, H1c	AK002321|Hist1h1c|50708|histone cluster 1, H1c
mm9_v1_chr1_+_92811676_92811782	0.72239	NANOG{mouse}.2	NM_053015|Mlph|171531|melanophilin	AF384098|Mlph|171531|melanophilin	BC006900|Mlph|171531|melanophilin	AK008973|Mlph|171531|melanophilin	AK019883|Mlph|171531|melanophilin	AK148274|Mlph|171531|melanophilin	BC150804|Mlph|171531|melanophilin
mm9_v1_chr12_+_70285127_70285208	0.718214	NANOG{mouse}.2	AK171000|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	NM_146035|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK152925|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK159185|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK166037|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK083370|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	BC010583|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	BC027169|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK151964|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK153382|Mgat2|217664|mannoside acetylglucosaminyltransferase 2
mm9_v1_chr7_-_67285104_67285104	0.715474	NANOG{mouse}.2	NM_001082962|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chr1_-_157626552_157626641	0.707944	NANOG{mouse}.2	AK171601|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1
mm9_v1_chr10_-_77734341_77734501	0.701218	NANOG{mouse}.2	
mm9_v1_chr7_-_26180629_26180730	0.69196	NANOG{mouse}.2	BC053502|Lipe|16890|lipase, hormone sensitive
mm9_v1_chr2_+_175639464_175639537	0.691924	NANOG{mouse}.2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr2_+_176266744_176266783	0.688693	NANOG{mouse}.2	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr11_-_83112392_83112480	0.688401	NANOG{mouse}.2	AK153798|Pex12|103737|peroxisomal biogenesis factor 12	AK166413|Pex12|103737|peroxisomal biogenesis factor 12	AK041175|Pex12|103737|peroxisomal biogenesis factor 12	AK035552|Pex12|103737|peroxisomal biogenesis factor 12	NM_134025|Pex12|103737|peroxisomal biogenesis factor 12
mm9_v1_chr5_-_31597792_31598351	0.685824	NANOG{mouse}.2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr12_-_86480787_86480938	0.68146	NANOG{mouse}.2	AK036734|Rps6kl1|238323|ribosomal protein S6 kinase-like 1
mm9_v1_chr5_+_122804377_122804463	0.679311	NANOG{mouse}.2	AK150330|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AK008248|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AK004103|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AF193794|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	NM_019780|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	BC005663|Vps29|56433|vacuolar protein sorting 29 (S. pombe)	AK036426|Vps29|56433|vacuolar protein sorting 29 (S. pombe)
mm9_v1_chr2_-_104334610_104334646	0.678586	NANOG{mouse}.2	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr12_-_60112855_60112974	0.666214	NANOG{mouse}.2	AY082671|Sec23a|20334|SEC23A (S. cerevisiae)	AK028152|Sec23a|20334|SEC23A (S. cerevisiae)
mm9_v1_chr11_+_106889431_106889676	0.663263	NANOG{mouse}.2	AK007422|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene	NM_001163473|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene	BC124997|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene	BC125006|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene
mm9_v1_chr7_-_118125571_118125608	0.660107	NANOG{mouse}.2	AK020536|Mrvi1|17540|MRV integration site 1	AK157169|Mrvi1|17540|MRV integration site 1	NM_194464|Mrvi1|17540|MRV integration site 1
mm9_v1_chr14_-_54873516_54873521	0.659682	NANOG{mouse}.2	U22107|Dad1|13135|defender against cell death 1
mm9_v1_chr13_+_49600158_49600323	0.658914	NANOG{mouse}.2	AK040995|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC089559|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	NM_001012324|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK134746|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK163501|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC056468|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC065151|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK038812|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific
mm9_v1_chr2_-_175163697_175163736	0.658891	NANOG{mouse}.2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr14_-_31304341_31304341	0.656387	NANOG{mouse}.2	AJ437292|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_028981|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr1_-_158649117_158649213	0.655276	NANOG{mouse}.2	BC031473|Fam20b|215015|family with sequence similarity 20, member B
mm9_v1_chr11_+_33863012_33863012	0.650627	NANOG{mouse}.2	AF020711|Kcnmb1|16533|potassium large conductance calcium-activated channel, subfamily M, beta member 1	NM_031169|Kcnmb1|16533|potassium large conductance calcium-activated channel, subfamily M, beta member 1
mm9_v1_chr4_-_126427788_126428041	0.649227	NANOG{mouse}.2	AK216583|Ncdn|26562|neurochondrin	AK122327|Ncdn|26562|neurochondrin
mm9_v1_chr7_-_27944870_27944933	0.649168	NANOG{mouse}.2	AK179611|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr8_+_120225866_120225892	0.644852	NANOG{mouse}.2	BC012682|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	X95685|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2
mm9_v1_chr5_-_42235518_42235530	0.641688	NANOG{mouse}.2	AK046296|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK053690|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK134590|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chr7_-_4704436_4704695	0.63886	NANOG{mouse}.2	CT010366|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC048670|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183406|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AK160152|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125562|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125564|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC145201|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107296|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107297|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AY152400|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183405|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2
mm9_v1_chr2_-_13413502_13413502	0.635357	NANOG{mouse}.2	NM_001081084|Cubn|65969|cubilin (intrinsic factor-cobalamin receptor)
mm9_v1_chr6_+_108733075_108733279	0.634451	NANOG{mouse}.2	AK152798|Arl8b|67166|ADP-ribosylation factor-like 8B	AK144177|Arl8b|67166|ADP-ribosylation factor-like 8B	AK076292|Arl8b|67166|ADP-ribosylation factor-like 8B	AK146307|Arl8b|67166|ADP-ribosylation factor-like 8B	AK159348|Arl8b|67166|ADP-ribosylation factor-like 8B	AK170645|Arl8b|67166|ADP-ribosylation factor-like 8B	AK012024|Arl8b|67166|ADP-ribosylation factor-like 8B	AK075941|Arl8b|67166|ADP-ribosylation factor-like 8B	AK151036|Arl8b|67166|ADP-ribosylation factor-like 8B	AK149822|Arl8b|67166|ADP-ribosylation factor-like 8B	BC013719|Arl8b|67166|ADP-ribosylation factor-like 8B	AK009279|Arl8b|67166|ADP-ribosylation factor-like 8B	AK169929|Arl8b|67166|ADP-ribosylation factor-like 8B	AK005999|Arl8b|67166|ADP-ribosylation factor-like 8B	AK195129|Arl8b|67166|ADP-ribosylation factor-like 8B	AB185206|Arl8b|67166|ADP-ribosylation factor-like 8B	CT010337|Arl8b|67166|ADP-ribosylation factor-like 8B	AK203754|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr1_-_137210293_137210334	0.626389	NANOG{mouse}.2	AF106620|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC010830|Timm17a|21854|translocase of inner mitochondrial membrane 17a	BC098216|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003114|Timm17a|21854|translocase of inner mitochondrial membrane 17a	AK003129|Timm17a|21854|translocase of inner mitochondrial membrane 17a	NM_011590|Timm17a|21854|translocase of inner mitochondrial membrane 17a
mm9_v1_chr2_-_152240515_152240566	0.624531	NANOG{mouse}.2	AK053859|Zcchc3|67917|zinc finger, CCHC domain containing 3
mm9_v1_chr2_+_175737015_175737088	0.61829	NANOG{mouse}.2	AK039408|Gm4724|100043915|predicted gene 4724	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	NM_001099349|Gm14308|100043381|predicted gene 14308	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr14_-_8491067_8491129	0.611312	NANOG{mouse}.2	AK049619|Gm2897|100040671|predicted gene 2897
mm9_v1_chr7_-_53069599_53069692	0.607751	NANOG{mouse}.2	BC004662|Cyth2|19158|cytohesin 2	AB013466|Cyth2|19158|cytohesin 2	AK168979|Cyth2|19158|cytohesin 2	AK143829|Cyth2|19158|cytohesin 2	AK172050|Cyth2|19158|cytohesin 2	AF079971|Cyth2|19158|cytohesin 2	AK045451|Cyth2|19158|cytohesin 2	BC088833|Cyth2|19158|cytohesin 2	AK078067|Cyth2|19158|cytohesin 2	NM_001112701|Cyth2|19158|cytohesin 2	NM_011181|Cyth2|19158|cytohesin 2
mm9_v1_chr3_+_82811802_82811817	0.604774	NANOG{mouse}.2	BC019828|Fgg|99571|fibrinogen gamma chain	BC019506|Fgg|99571|fibrinogen gamma chain	NM_133862|Fgg|99571|fibrinogen gamma chain
mm9_v1_chr17_+_3482314_3482460	0.604492	NANOG{mouse}.2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr2_-_175261262_175261335	0.603797	NANOG{mouse}.2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK039408|Gm4724|100043915|predicted gene 4724
mm9_v1_chr4_-_133101912_133101941	0.601967	NANOG{mouse}.2	NM_010948|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr1_+_74283381_74283464	0.591909	NANOG{mouse}.2	AK083263|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr11_-_100981015_100981199	0.587071	NANOG{mouse}.2	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr6_-_146596323_146596323	0.583341	NANOG{mouse}.2	NM_001178001|Gm6654|626175|predicted pseudogene 6654
mm9_v1_chr5_+_91201460_91201461	0.580752	NANOG{mouse}.2	AK159278|Pf4|56744|platelet factor 4	AK160040|Pf4|56744|platelet factor 4	NM_019932|Pf4|56744|platelet factor 4
mm9_v1_chr5_-_142985612_142985614	0.580084	NANOG{mouse}.2	AK079539|Radil|231858|Ras association and DIL domains
mm9_v1_chr16_+_55966458_55966533	0.580011	NANOG{mouse}.2	AK028209|Rpl24|68193|ribosomal protein L24	AK018731|Rpl24|68193|ribosomal protein L24	AK136631|Rpl24|68193|ribosomal protein L24	AK019214|Rpl24|68193|ribosomal protein L24	AK077617|Rpl24|68193|ribosomal protein L24	BC053377|Rpl24|68193|ribosomal protein L24	BC058114|Rpl24|68193|ribosomal protein L24	BC092008|Rpl24|68193|ribosomal protein L24	BC002110|Rpl24|68193|ribosomal protein L24
mm9_v1_chr10_-_61949345_61949552	0.577147	NANOG{mouse}.2	AK028096|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_001113355|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK086851|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK150244|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK151360|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC007148|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK149859|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC058236|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK147989|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK152424|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK165853|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	S41204|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK159783|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK167592|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168537|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168213|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_133672|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)
mm9_v1_chr2_-_176421012_176421051	0.567567	NANOG{mouse}.2	BC099528|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	NM_001099349|Gm14308|100043381|predicted gene 14308	NM_001100415|Gm14430|627914|predicted gene 14430	NM_001101804|Gm14434|668039|predicted gene 14434	AK010871|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene	AK002444|0610010B08Rik|100039060|RIKEN cDNA 0610010B08 gene
mm9_v1_chr8_+_131256428_131256477	0.5663	NANOG{mouse}.2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr19_-_7066983_7067014	0.564507	NANOG{mouse}.2	BC049281|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	AK170008|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	AK008507|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4
mm9_v1_chr10_+_59754384_59754499	0.561617	NANOG{mouse}.2	AK159622|Psap|19156|prosaposin	AK210181|Psap|19156|prosaposin	BC036266|Psap|19156|prosaposin	AK180106|Psap|19156|prosaposin	AK194829|Psap|19156|prosaposin	AK197804|Psap|19156|prosaposin	AK201095|Psap|19156|prosaposin	AK203509|Psap|19156|prosaposin
mm9_v1_chr10_+_80643263_80643395	0.558944	NANOG{mouse}.2	AK189998|Eef2|13629|eukaryotic translation elongation factor 2	AK190198|Eef2|13629|eukaryotic translation elongation factor 2	AK190350|Eef2|13629|eukaryotic translation elongation factor 2	AK190868|Eef2|13629|eukaryotic translation elongation factor 2	AK191552|Eef2|13629|eukaryotic translation elongation factor 2	AK191881|Eef2|13629|eukaryotic translation elongation factor 2	AK192244|Eef2|13629|eukaryotic translation elongation factor 2	AK192889|Eef2|13629|eukaryotic translation elongation factor 2	AK192915|Eef2|13629|eukaryotic translation elongation factor 2	AK193101|Eef2|13629|eukaryotic translation elongation factor 2	AK193468|Eef2|13629|eukaryotic translation elongation factor 2	AK193703|Eef2|13629|eukaryotic translation elongation factor 2	AK193872|Eef2|13629|eukaryotic translation elongation factor 2	AK194719|Eef2|13629|eukaryotic translation elongation factor 2	AK195368|Eef2|13629|eukaryotic translation elongation factor 2	AK195633|Eef2|13629|eukaryotic translation elongation factor 2	AK195893|Eef2|13629|eukaryotic translation elongation factor 2	AK196946|Eef2|13629|eukaryotic translation elongation factor 2	AK197219|Eef2|13629|eukaryotic translation elongation factor 2	AK197725|Eef2|13629|eukaryotic translation elongation factor 2	AK198008|Eef2|13629|eukaryotic translation elongation factor 2	AK198317|Eef2|13629|eukaryotic translation elongation factor 2	AK198429|Eef2|13629|eukaryotic translation elongation factor 2	AK199118|Eef2|13629|eukaryotic translation elongation factor 2	AK200031|Eef2|13629|eukaryotic translation elongation factor 2	AK200070|Eef2|13629|eukaryotic translation elongation factor 2	AK200383|Eef2|13629|eukaryotic translation elongation factor 2	AK201054|Eef2|13629|eukaryotic translation elongation factor 2	AK201169|Eef2|13629|eukaryotic translation elongation factor 2	AK201226|Eef2|13629|eukaryotic translation elongation factor 2	AK201313|Eef2|13629|eukaryotic translation elongation factor 2	AK201376|Eef2|13629|eukaryotic translation elongation factor 2	AK202006|Eef2|13629|eukaryotic translation elongation factor 2	AK202706|Eef2|13629|eukaryotic translation elongation factor 2	AK202834|Eef2|13629|eukaryotic translation elongation factor 2	AK203709|Eef2|13629|eukaryotic translation elongation factor 2	AK203838|Eef2|13629|eukaryotic translation elongation factor 2	AK204069|Eef2|13629|eukaryotic translation elongation factor 2	AK204359|Eef2|13629|eukaryotic translation elongation factor 2	AK204850|Eef2|13629|eukaryotic translation elongation factor 2	AK207898|Eef2|13629|eukaryotic translation elongation factor 2	AK215864|Eef2|13629|eukaryotic translation elongation factor 2	AK215877|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr4_-_137871509_137871567	0.556538	NANOG{mouse}.2	AK181855|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr7_+_80536124_80536202	0.551574	NANOG{mouse}.2	AJ557513|Rgma|244058|RGM domain family, member A	AK145224|Rgma|244058|RGM domain family, member A	AK160661|Rgma|244058|RGM domain family, member A	AK141860|Rgma|244058|RGM domain family, member A
mm9_v1_chr5_+_19413335_19413335	0.547855	NANOG{mouse}.2	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr7_+_80536079_80536116	0.544474	NANOG{mouse}.2	BC023870|Rgma|244058|RGM domain family, member A
mm9_v1_chr14_+_32454236_32454303	0.541724	NANOG{mouse}.2	NM_025295|Btd|26363|biotinidase	AK005506|Btd|26363|biotinidase	AK135375|Btd|26363|biotinidase	BC024051|Btd|26363|biotinidase
mm9_v1_chr6_+_145159653_145159723	0.540498	NANOG{mouse}.2	NM_001163628|Lyrm5|67636|LYR motif containing 5	AF412300|Lyrm5|67636|LYR motif containing 5	NM_133688|Lyrm5|67636|LYR motif containing 5	AY753325|Lyrm5|67636|LYR motif containing 5	AF412298|Lyrm5|67636|LYR motif containing 5	AK075835|Lyrm5|67636|LYR motif containing 5	AF412299|Lyrm5|67636|LYR motif containing 5	AK015530|Lyrm5|67636|LYR motif containing 5	AK046179|Lyrm5|67636|LYR motif containing 5	BC021522|Lyrm5|67636|LYR motif containing 5
mm9_v1_chr5_-_144288812_144288864	0.538636	NANOG{mouse}.2	BC051053|Rac1|19353|RAS-related C3 botulinum substrate 1	BC003828|Rac1|19353|RAS-related C3 botulinum substrate 1	AK008435|Rac1|19353|RAS-related C3 botulinum substrate 1	AK009017|Rac1|19353|RAS-related C3 botulinum substrate 1	AK011072|Rac1|19353|RAS-related C3 botulinum substrate 1	AK034601|Rac1|19353|RAS-related C3 botulinum substrate 1	AK166383|Rac1|19353|RAS-related C3 botulinum substrate 1	NM_009007|Rac1|19353|RAS-related C3 botulinum substrate 1	AK047969|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr7_+_25378887_25378951	0.535003	NANOG{mouse}.2	BC010592|Ethe1|66071|ethylmalonic encephalopathy 1	AK002666|Ethe1|66071|ethylmalonic encephalopathy 1	AB049623|Ethe1|66071|ethylmalonic encephalopathy 1	BC083162|Ethe1|66071|ethylmalonic encephalopathy 1
mm9_v1_chr17_+_86567513_86567537	0.527757	NANOG{mouse}.2	AK085351|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr2_+_32251776_32251794	0.525468	NANOG{mouse}.2	BC004846|Ptges2|96979|prostaglandin E synthase 2	AK050616|Ptges2|96979|prostaglandin E synthase 2	AK002798|Ptges2|96979|prostaglandin E synthase 2
mm9_v1_chr6_+_113573980_113574047	0.524177	NANOG{mouse}.2	AK159238|Vhl|22346|von Hippel-Lindau tumor suppressor	U12570|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171604|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171264|Vhl|22346|von Hippel-Lindau tumor suppressor	NM_009507|Vhl|22346|von Hippel-Lindau tumor suppressor	S76748|Vhl|22346|von Hippel-Lindau tumor suppressor	BC052417|Vhl|22346|von Hippel-Lindau tumor suppressor	AK161408|Vhl|22346|von Hippel-Lindau tumor suppressor
mm9_v1_chr17_+_25965977_25966025	0.517138	NANOG{mouse}.2	AK155810|Jmjd8|72106|jumonji domain containing 8	NM_028101|Jmjd8|72106|jumonji domain containing 8	AK172073|Jmjd8|72106|jumonji domain containing 8	AK011308|Jmjd8|72106|jumonji domain containing 8	AK148079|Jmjd8|72106|jumonji domain containing 8	BC010800|Jmjd8|72106|jumonji domain containing 8
mm9_v1_chr3_-_151500395_151500491	0.516664	NANOG{mouse}.2	AK087833|Ptgfr|19220|prostaglandin F receptor	D17433|Ptgfr|19220|prostaglandin F receptor	BC064794|Ptgfr|19220|prostaglandin F receptor	AK141760|Ptgfr|19220|prostaglandin F receptor	AK076450|Ptgfr|19220|prostaglandin F receptor	NM_008966|Ptgfr|19220|prostaglandin F receptor
mm9_v1_chr9_+_120448960_120448967	0.513259	NANOG{mouse}.2	AK046218|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK087561|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY714060|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	BC079871|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY376710|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chr4_-_133101802_133101911	0.512287	NANOG{mouse}.2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr8_-_87549120_87549191	0.504876	NANOG{mouse}.2	BC016453|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	BC083335|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AF039405|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	NM_019652|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK007827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK171690|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr5_-_38952777_38952930	0.501963	NANOG{mouse}.2	BC119358|Wdr1|22388|WD repeat domain 1	BC125295|Wdr1|22388|WD repeat domain 1	AK165225|Wdr1|22388|WD repeat domain 1	AK165323|Wdr1|22388|WD repeat domain 1	AK167813|Wdr1|22388|WD repeat domain 1	AK151146|Wdr1|22388|WD repeat domain 1	AF020055|Wdr1|22388|WD repeat domain 1	NM_011715|Wdr1|22388|WD repeat domain 1	AK153338|Wdr1|22388|WD repeat domain 1	AK170379|Wdr1|22388|WD repeat domain 1	AK167241|Wdr1|22388|WD repeat domain 1	AK169893|Wdr1|22388|WD repeat domain 1	AK156300|Wdr1|22388|WD repeat domain 1	AK167275|Wdr1|22388|WD repeat domain 1	AK004858|Wdr1|22388|WD repeat domain 1	AK169835|Wdr1|22388|WD repeat domain 1	BC049117|Wdr1|22388|WD repeat domain 1
mm9_v1_chr2_-_92232506_92232632	0.495974	NANOG{mouse}.2	AF109769|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109770|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109771|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr9_+_108419410_108419495	0.494788	NANOG{mouse}.2	NM_001114119|Qrich1|69232|glutamine-rich 1	NM_175143|Qrich1|69232|glutamine-rich 1	AK083212|Qrich1|69232|glutamine-rich 1	BC006738|Qrich1|69232|glutamine-rich 1	AK151491|Qrich1|69232|glutamine-rich 1	AK151530|Qrich1|69232|glutamine-rich 1	BC120915|Qrich1|69232|glutamine-rich 1	BC120916|Qrich1|69232|glutamine-rich 1
mm9_v1_chrX_+_160577257_160577273	0.48952	NANOG{mouse}.2	NM_001130513|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr8_+_73988823_73988883	0.477539	NANOG{mouse}.2	NM_053162|Mrpl34|94065|mitochondrial ribosomal protein L34	BC052086|Mrpl34|94065|mitochondrial ribosomal protein L34	AB049653|Mrpl34|94065|mitochondrial ribosomal protein L34	BC056979|Mrpl34|94065|mitochondrial ribosomal protein L34	AK018724|Mrpl34|94065|mitochondrial ribosomal protein L34	AK170156|Mrpl34|94065|mitochondrial ribosomal protein L34
mm9_v1_chr11_+_20125239_20125296	0.470828	NANOG{mouse}.2	AK078671|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr13_-_54652983_54653158	0.469675	NANOG{mouse}.2	AK216925|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK206564|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK215484|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK216083|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK218676|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene
mm9_v1_chr5_-_104421860_104421906	0.46906	NANOG{mouse}.2	AK033054|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chr2_-_84555162_84555500	0.464272	NANOG{mouse}.2	BC065155|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK082513|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK145086|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AK173251|Zdhhc5|228136|zinc finger, DHHC domain containing 5	AY894891|Zdhhc5|228136|zinc finger, DHHC domain containing 5	NM_144887|Zdhhc5|228136|zinc finger, DHHC domain containing 5
mm9_v1_chr15_-_77801154_77801262	0.463387	NANOG{mouse}.2	BC089020|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AB012580|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	BC018598|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK049767|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK045228|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK145689|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK158344|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	AK168256|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D	NM_018749|Eif3d|55944|eukaryotic translation initiation factor 3, subunit D
mm9_v1_chr10_-_36858671_36858801	0.459133	NANOG{mouse}.2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr7_-_3169082_3169203	0.456723	NANOG{mouse}.2	BC050126|AU018091|245128|expressed sequence AU018091	AB201954|AU018091|245128|expressed sequence AU018091	BC080735|AU018091|245128|expressed sequence AU018091	NM_001004153|AU018091|245128|expressed sequence AU018091
mm9_v1_chr7_-_91520991_91521040	0.454956	NANOG{mouse}.2	AK032628|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr16_-_20302299_20302462	0.449691	NANOG{mouse}.2	AK039142|Parl|381038|presenilin associated, rhomboid-like	BC083153|Parl|381038|presenilin associated, rhomboid-like	AK151652|Parl|381038|presenilin associated, rhomboid-like	NM_001005767|Parl|381038|presenilin associated, rhomboid-like	AK150980|Parl|381038|presenilin associated, rhomboid-like	AK207637|Parl|381038|presenilin associated, rhomboid-like
mm9_v1_chr1_+_141318927_141318961	0.448896	NANOG{mouse}.2	NM_172643|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog	AK036544|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog
mm9_v1_chr4_+_131864590_131864592	0.447918	NANOG{mouse}.2	AK009175|Snhg12|100039864|small nucleolar RNA host gene 12
mm9_v1_chr7_+_19679892_19679978	0.440292	NANOG{mouse}.2	NM_011383|Six5|20475|sine oculis-related homeobox 5 homolog (Drosophila)
mm9_v1_chrX_+_160577312_160577325	0.436958	NANOG{mouse}.2	EF408739|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	EF408740|Ace2|70008|angiotensin I converting enzyme (peptidyl-dipeptidase A) 2
mm9_v1_chr14_-_8826504_8826661	0.436768	NANOG{mouse}.2	U76110|Dnase1l3|13421|deoxyribonuclease 1-like 3	AK156109|Dnase1l3|13421|deoxyribonuclease 1-like 3	AK171843|Dnase1l3|13421|deoxyribonuclease 1-like 3	BC012671|Dnase1l3|13421|deoxyribonuclease 1-like 3	AF047355|Dnase1l3|13421|deoxyribonuclease 1-like 3
mm9_v1_chr11_+_114732740_114732757	0.43405	NANOG{mouse}.2	BC005757|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr13_-_93253967_93253985	0.430307	NANOG{mouse}.2	AK015100|Fam151b|73942|family with sequence similarity 151, member B	AK162422|Fam151b|73942|family with sequence similarity 151, member B	NM_001163627|Fam151b|73942|family with sequence similarity 151, member B
mm9_v1_chr10_-_13272899_13272947	0.41937	NANOG{mouse}.2	BC037606|Pex3|56535|peroxisomal biogenesis factor 3	AK005315|Pex3|56535|peroxisomal biogenesis factor 3	AK012827|Pex3|56535|peroxisomal biogenesis factor 3	AK146934|Pex3|56535|peroxisomal biogenesis factor 3	NM_001164195|Pex3|56535|peroxisomal biogenesis factor 3	NM_019961|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr2_-_26766145_26766181	0.418674	NANOG{mouse}.2	BC018225|Med22|20933|mediator complex subunit 22	NM_001033908|Med22|20933|mediator complex subunit 22	NM_011513|Med22|20933|mediator complex subunit 22
mm9_v1_chr10_+_20760625_20760625	0.405873	NANOG{mouse}.2	AK161335|Ahi1|52906|Abelson helper integration site 1	NM_001177776|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr17_+_46434369_46434431	0.403367	NANOG{mouse}.2	NM_207666|Dlk2|106565|delta-like 2 homolog (Drosophila)	BC118057|Dlk2|106565|delta-like 2 homolog (Drosophila)	BC122518|Dlk2|106565|delta-like 2 homolog (Drosophila)
mm9_v1_chr18_-_63546822_63546836	0.402715	NANOG{mouse}.2	AK031437|Fam38b|667742|family with sequence similarity 38, member B	AK053702|Fam38b|667742|family with sequence similarity 38, member B	NM_001039485|Fam38b|667742|family with sequence similarity 38, member B
mm9_v1_chr7_+_25292375_25292405	0.400993	NANOG{mouse}.2	AK139174|Zfp428|232969|zinc finger protein 428
mm9_v1_chr13_+_30228397_30228535	0.399605	NANOG{mouse}.2	BC024653|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK020281|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK033388|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK137755|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK146984|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AB297382|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AB305045|Mboat1|218121|membrane bound O-acyltransferase domain containing 1
mm9_v1_chr1_-_164408008_164408119	0.399554	NANOG{mouse}.2	BC141143|Dnm3|103967|dynamin 3	BC141144|Dnm3|103967|dynamin 3	AK147678|Dnm3|103967|dynamin 3	AK082698|Dnm3|103967|dynamin 3
mm9_v1_chr4_+_151699954_151699986	0.399365	NANOG{mouse}.2	BC007139|Rpl22|19934|ribosomal protein L22	AK003022|Rpl22|19934|ribosomal protein L22	AK169731|Rpl22|19934|ribosomal protein L22	AK009094|Rpl22|19934|ribosomal protein L22	D17653|Rpl22|19934|ribosomal protein L22	AK168353|Rpl22|19934|ribosomal protein L22	AK169078|Rpl22|19934|ribosomal protein L22	BC021344|Rpl22|19934|ribosomal protein L22	NM_009079|Rpl22|19934|ribosomal protein L22
mm9_v1_chr6_+_48845252_48845281	0.397543	NANOG{mouse}.2	BC021880|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)	NM_029638|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)	AK144567|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)	BC034215|Abp1|76507|amiloride binding protein 1 (amine oxidase, copper-containing)
mm9_v1_chr17_+_3326513_3326683	0.394534	NANOG{mouse}.2	BC067048|Tiam2|24001|T-cell lymphoma invasion and metastasis 2	NM_001122998|Tiam2|24001|T-cell lymphoma invasion and metastasis 2	BC079600|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr4_+_86221626_86221649	0.390174	NANOG{mouse}.2	AK144591|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr5_+_91201538_91201542	0.389582	NANOG{mouse}.2	AB017491|Pf4|56744|platelet factor 4
mm9_v1_chr11_-_5703752_5703798	0.387881	NANOG{mouse}.2	NM_018870|Pgam2|56012|phosphoglycerate mutase 2
mm9_v1_chr3_-_10208480_10208567	0.386454	NANOG{mouse}.2	M28726|Fabp4|11770|fatty acid binding protein 4, adipocyte	U96149|Fabp9|21884|fatty acid binding protein 9, testis	CT010390|Fabp4|11770|fatty acid binding protein 4, adipocyte	K02109|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC018558|Fabp4|11770|fatty acid binding protein 4, adipocyte	BC054426|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr7_+_29595894_29595998	0.386073	NANOG{mouse}.2	NM_177301|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	BC099683|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	BC027206|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	AK144684|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L	AK085906|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L
mm9_v1_chr9_+_72887524_72887561	0.382177	NANOG{mouse}.2	AK009244|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene	AK003016|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene	AK019875|5031420N21Rik|78815|RIKEN cDNA 5031420N21 gene	BC037369|2310009A05Rik|66364|RIKEN cDNA 2310009A05 gene
mm9_v1_chr18_-_6135924_6136095	0.378651	NANOG{mouse}.2	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr13_+_23830944_23831229	0.37802	NANOG{mouse}.2	AK135614|Hist1h1c|50708|histone cluster 1, H1c	AK209931|Hist1h1c|50708|histone cluster 1, H1c	AK211271|Hist1h1c|50708|histone cluster 1, H1c	AK210230|Hist1h1c|50708|histone cluster 1, H1c
mm9_v1_chr13_-_105844882_105845009	0.377346	NANOG{mouse}.2	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr2_-_102241053_102241195	0.374876	NANOG{mouse}.2	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr11_+_69906223_69906270	0.368476	NANOG{mouse}.2	X53042|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr7_+_29573191_29573292	0.365232	NANOG{mouse}.2	AK200274|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr16_-_56029770_56029852	0.363618	NANOG{mouse}.2	AK150595|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK145195|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK152279|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC106192|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC061235|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK159201|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC023320|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK168723|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK166071|Pcnp|76302|PEST proteolytic signal containing nuclear protein	NM_001024622|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132588|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132590|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC145194|Pcnp|76302|PEST proteolytic signal containing nuclear protein
mm9_v1_chr3_+_135101664_135101764	0.356634	NANOG{mouse}.2	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr17_+_45701100_45701100	0.355245	NANOG{mouse}.2	AK167343|Slc35b2|73836|solute carrier family 35, member B2	NM_028662|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr7_-_26082941_26082973	0.34716	NANOG{mouse}.2	AK167496|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	BC067015|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	AK039375|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	AK154547|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	NM_008776|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	U57746|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm9_v1_chr19_-_41674337_41674343	0.341853	NANOG{mouse}.2	
mm9_v1_chr6_-_149050201_149050210	0.326225	NANOG{mouse}.2	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr6_+_55402021_55402057	0.323894	NANOG{mouse}.2	AK147291|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	BC067039|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr18_+_37112301_37112419	0.323173	NANOG{mouse}.2	AK149282|Pcdha4|12936|protocadherin alpha 4	AK048980|Pcdha4|12936|protocadherin alpha 4	BC060211|Pcdha4|12936|protocadherin alpha 4	D86916|Pcdha4|12936|protocadherin alpha 4	NM_007766|Pcdha4|12936|protocadherin alpha 4	AF464180|Pcdha4-g|100384868|protocadherin alpha 4-gamma	NM_001174154|Pcdha4-g|100384868|protocadherin alpha 4-gamma	AY013762|Pcdha4|12936|protocadherin alpha 4
mm9_v1_chr12_+_114214947_114214965	0.322817	NANOG{mouse}.2	AK146991|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chr7_+_27542160_27542205	0.322673	NANOG{mouse}.2	BC137965|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	BC137966|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	AK029227|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	AF047529|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19	NM_007814|Cyp2b19|13090|cytochrome P450, family 2, subfamily b, polypeptide 19
mm9_v1_chr4_+_155384167_155384192	0.319673	NANOG{mouse}.2	
mm9_v1_chr5_-_138362822_138362852	0.319112	NANOG{mouse}.2	X63023|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	BC046592|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136494|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136529|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK149572|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	NM_007819|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13
mm9_v1_chr19_-_7066761_7066761	0.318941	NANOG{mouse}.2	AF036875|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4	NM_020566|Dnajc4|57431|DnaJ (Hsp40) homolog, subfamily C, member 4
mm9_v1_chr12_-_70285050_70285056	0.316576	NANOG{mouse}.2	NM_025589|Rpl36al|66483|ribosomal protein L36A-like
mm9_v1_chr19_+_8925257_8925301	0.314405	NANOG{mouse}.2	AK158268|Lrrn4cl|68852|LRRN4 C-terminal like	AK087615|Lrrn4cl|68852|LRRN4 C-terminal like	NM_001013019|Lrrn4cl|68852|LRRN4 C-terminal like	BC107244|Lrrn4cl|68852|LRRN4 C-terminal like	BC107245|Lrrn4cl|68852|LRRN4 C-terminal like
mm9_v1_chr9_-_45012097_45012172	0.31204	NANOG{mouse}.2	BC021368|Tmprss4|214523|transmembrane protease, serine 4	AY043240|Tmprss4|214523|transmembrane protease, serine 4	NM_145403|Tmprss4|214523|transmembrane protease, serine 4	AK078890|Tmprss4|214523|transmembrane protease, serine 4
mm9_v1_chr1_-_192994532_192994569	0.308602	NANOG{mouse}.2	AK217100|Atf3|11910|activating transcription factor 3
mm9_v1_chr1_-_136131981_136132033	0.307052	NANOG{mouse}.2	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr6_-_125236045_125236060	0.305078	NANOG{mouse}.2	BC050770|Tuba3a|22144|tubulin, alpha 3A	BC089547|Tuba3a|22144|tubulin, alpha 3A	M13442|Tuba3a|22144|tubulin, alpha 3A	AK132775|Tuba3a|22144|tubulin, alpha 3A	NM_009446|Tuba3a|22144|tubulin, alpha 3A
mm9_v1_chr11_-_102046532_102046628	0.303753	NANOG{mouse}.2	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr11_+_97702591_97702632	0.302505	NANOG{mouse}.2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr8_+_37552244_37552244	0.301256	NANOG{mouse}.2	BC052184|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	NM_176952|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene
mm9_v1_chr19_-_7457315_7457483	0.299792	NANOG{mouse}.2	AK163590|AI846148|68229|expressed sequence AI846148	BC125249|AI846148|68229|expressed sequence AI846148	AK168010|AI846148|68229|expressed sequence AI846148	AK166227|AI846148|68229|expressed sequence AI846148	AK090385|AI846148|68229|expressed sequence AI846148
mm9_v1_chr7_+_140175699_140175731	0.287585	NANOG{mouse}.2	AJ250693|Zranb1|360216|zinc finger, RAN-binding domain containing 1
mm9_v1_chr5_+_130845319_130845359	0.287024	NANOG{mouse}.2	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr9_-_113562893_113563007	0.284542	NANOG{mouse}.2	AK035750|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK086540|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK157704|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr16_-_50432421_50432504	0.283766	NANOG{mouse}.2	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chrX_+_71669985_71670011	0.278345	NANOG{mouse}.2	AF513109|Ikbkg|16151|inhibitor of kappaB kinase gamma
mm9_v1_chr2_-_151805846_151805913	0.277762	NANOG{mouse}.2	AK017381|Fam110a|73847|family with sequence similarity 110, member A	BC034240|Fam110a|73847|family with sequence similarity 110, member A	AK154171|Fam110a|73847|family with sequence similarity 110, member A	BC094463|Fam110a|73847|family with sequence similarity 110, member A	AK050928|Fam110a|73847|family with sequence similarity 110, member A	AK080248|Fam110a|73847|family with sequence similarity 110, member A
mm9_v1_chr4_-_41261743_41261803	0.270616	NANOG{mouse}.2	AK173289|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr14_-_32454146_32454155	0.27005	NANOG{mouse}.2	AK041686|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AJ132139|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK050078|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	NM_019975|Hacl1|56794|2-hydroxyacyl-CoA lyase 1
mm9_v1_chr6_+_34362333_34362371	0.268393	NANOG{mouse}.2	AK147775|Akr1b7|11997|aldo-keto reductase family 1, member B7	NM_009731|Akr1b7|11997|aldo-keto reductase family 1, member B7	AK002705|Akr1b7|11997|aldo-keto reductase family 1, member B7
mm9_v1_chr1_+_173144142_173144169	0.260907	NANOG{mouse}.2	AK149381|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3	BC089541|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3	AF009327|Nr1i3|12355|nuclear receptor subfamily 1, group I, member 3
mm9_v1_chr4_+_86221615_86221621	0.259375	NANOG{mouse}.2	BC037615|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr5_+_91201521_91201531	0.25508	NANOG{mouse}.2	BC061111|Pf4|56744|platelet factor 4
mm9_v1_chr3_+_88420058_88420079	0.254505	NANOG{mouse}.2	AK158232|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr15_-_63640293_63640293	0.254155	NANOG{mouse}.2	AK137662|Gsdmc|83492|gasdermin C	NM_031378|Gsdmc|83492|gasdermin C
mm9_v1_chr15_+_76734729_76734768	0.254031	NANOG{mouse}.2	BC043017|Rpl8|26961|ribosomal protein L8
mm9_v1_chr9_+_120448935_120448954	0.253972	NANOG{mouse}.2	NM_178676|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK032057|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chr15_-_53734033_53734098	0.2507	NANOG{mouse}.2	AK032588|Samd12|320679|sterile alpha motif domain containing 12	AK080536|Samd12|320679|sterile alpha motif domain containing 12
mm9_v1_chr2_-_110790259_110790446	0.249327	NANOG{mouse}.2	NM_001128103|Ano3|228432|anoctamin 3	AK045930|Ano3|228432|anoctamin 3	NM_001081556|Ano3|228432|anoctamin 3
mm9_v1_chr11_-_69761489_69761691	0.246392	NANOG{mouse}.2	AB008453|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	M23383|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	BC014282|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK138832|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK164310|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK137607|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	AK160882|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4	NM_009204|Slc2a4|20528|solute carrier family 2 (facilitated glucose transporter), member 4
mm9_v1_chr15_-_74672048_74672072	0.244306	NANOG{mouse}.2	AK142439|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK163083|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	AK168839|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139248|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	BC139250|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1	NM_001033229|Cyp11b1|110115|cytochrome P450, family 11, subfamily b, polypeptide 1
mm9_v1_chr2_-_25079684_25079784	0.244175	NANOG{mouse}.2	AK006924|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr11_-_31270060_31270077	0.242749	NANOG{mouse}.2	AF031035|Stc2|20856|stanniocalcin 2	NM_011491|Stc2|20856|stanniocalcin 2
mm9_v1_chr15_-_98438063_98438063	0.24023	NANOG{mouse}.2	AK147516|Adcy6|11512|adenylate cyclase 6	NM_007405|Adcy6|11512|adenylate cyclase 6
mm9_v1_chr10_-_13272820_13272870	0.233444	NANOG{mouse}.2	BC033415|Pex3|56535|peroxisomal biogenesis factor 3	AK075820|Pex3|56535|peroxisomal biogenesis factor 3	AF152996|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr18_+_38578583_38578694	0.232083	NANOG{mouse}.2	AF220209|Ndfip1|65113|Nedd4 family interacting protein 1	AK050560|Ndfip1|65113|Nedd4 family interacting protein 1	BC026372|Ndfip1|65113|Nedd4 family interacting protein 1	NM_022996|Ndfip1|65113|Nedd4 family interacting protein 1	BC020359|Ndfip1|65113|Nedd4 family interacting protein 1
mm9_v1_chr10_+_128370814_128370878	0.231833	NANOG{mouse}.2	NM_008398|Itga7|16404|integrin alpha 7	L23423|Itga7|16404|integrin alpha 7	AK157612|Itga7|16404|integrin alpha 7
mm9_v1_chr19_-_6982094_6982140	0.227767	NANOG{mouse}.2	BC014682|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr2_+_181498036_181498036	0.22632	NANOG{mouse}.2	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr8_-_125736641_125736711	0.216848	NANOG{mouse}.2	BC023807|Chmp1a|234852|chromatin modifying protein 1A	BC036152|Chmp1a|234852|chromatin modifying protein 1A	AK046416|Chmp1a|234852|chromatin modifying protein 1A	AK159830|Chmp1a|234852|chromatin modifying protein 1A	NM_145606|Chmp1a|234852|chromatin modifying protein 1A
mm9_v1_chr16_-_36874886_36874911	0.215778	NANOG{mouse}.2	BC056626|Eaf2|106389|ELL associated factor 2	NM_134111|Eaf2|106389|ELL associated factor 2
mm9_v1_chr7_+_18595237_18595250	0.213721	NANOG{mouse}.2	AK005537|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	NM_027210|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	NM_028171|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	AK146045|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	AK005430|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13	BC099430|Ceacam13|69785|carcinoembryonic antigen-related cell adhesion molecule 13
mm9_v1_chr7_+_125884231_125884271	0.213209	NANOG{mouse}.2	AK136140|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK018573|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK050302|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK011615|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	AK135249|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene	BC054720|9030624J02Rik|71517|RIKEN cDNA 9030624J02 gene
mm9_v1_chr4_-_41261874_41261885	0.207278	NANOG{mouse}.2	AK005099|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK090028|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK030173|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK143635|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr5_+_91360248_91360293	0.205248	NANOG{mouse}.2	BC054409|Mthfd2l|665563|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	AK049901|Mthfd2l|665563|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm9_v1_chr19_-_4269161_4269181	0.203503	NANOG{mouse}.2	AK148293|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK171514|Ssh3|245857|slingshot homolog 3 (Drosophila)	AB099289|Ssh3|245857|slingshot homolog 3 (Drosophila)	BC028922|Ssh3|245857|slingshot homolog 3 (Drosophila)	NM_198113|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK038981|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK149880|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK166342|Ssh3|245857|slingshot homolog 3 (Drosophila)
mm9_v1_chr18_+_75165496_75165648	0.199102	NANOG{mouse}.2	AK077642|BC031181|407819|cDNA sequence BC031181	BC016084|BC031181|407819|cDNA sequence BC031181	NM_001001181|BC031181|407819|cDNA sequence BC031181	AK131658|BC031181|407819|cDNA sequence BC031181	BC031181|BC031181|407819|cDNA sequence BC031181	BC027819|BC031181|407819|cDNA sequence BC031181	AK180483|BC031181|407819|cDNA sequence BC031181	AK187367|BC031181|407819|cDNA sequence BC031181
mm9_v1_chr4_+_116269256_116269264	0.199093	NANOG{mouse}.2	AK076542|Ccdc17|622665|coiled-coil domain containing 17
mm9_v1_chr4_-_86873866_86873867	0.197561	NANOG{mouse}.2	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr6_+_55401971_55401981	0.195157	NANOG{mouse}.2	AK083108|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_001025372|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_007407|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	AK042820|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr6_+_85401450_85401503	0.193909	NANOG{mouse}.2	NM_007638|Cct7|12468|chaperonin containing Tcp1, subunit 7 (eta)
mm9_v1_chr1_+_24202041_24202085	0.193614	NANOG{mouse}.2	AK160749|Col9a1|12839|collagen, type IX, alpha 1	BC038017|Col9a1|12839|collagen, type IX, alpha 1	AK028339|Col9a1|12839|collagen, type IX, alpha 1	AK011547|Col9a1|12839|collagen, type IX, alpha 1
mm9_v1_chr1_+_167391318_167391475	0.192102	NANOG{mouse}.2	AK011889|Brp44|70456|brain protein 44	NM_027430|Brp44|70456|brain protein 44	AK151522|Brp44|70456|brain protein 44	AK002233|Brp44|70456|brain protein 44	AK008044|Brp44|70456|brain protein 44
mm9_v1_chr6_+_55402231_55402288	0.190345	NANOG{mouse}.2	AK147609|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	D82935|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr2_+_91512033_91512158	0.187994	NANOG{mouse}.2	AK083702|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr6_+_29298117_29298193	0.186633	NANOG{mouse}.2	AK163674|Calu|12321|calumenin	NM_007594|Calu|12321|calumenin	NM_184053|Calu|12321|calumenin	AK035600|Calu|12321|calumenin	BC051423|Calu|12321|calumenin	AK032402|Calu|12321|calumenin	AK147756|Calu|12321|calumenin	AK160795|Calu|12321|calumenin	AK161807|Calu|12321|calumenin	AK166705|Calu|12321|calumenin	AK148178|Calu|12321|calumenin	AY225334|Calu|12321|calumenin	U81829|Calu|12321|calumenin	AK135295|Calu|12321|calumenin
mm9_v1_chr10_+_81111813_81111813	0.182623	NANOG{mouse}.2	BC057364|Gm10778|100233208|predicted gene 10778	NM_001142963|Gm10778|100233208|predicted gene 10778
mm9_v1_chr4_-_41261905_41261949	0.182485	NANOG{mouse}.2	NM_026893|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr19_+_45122281_45122364	0.181407	NANOG{mouse}.2	AK154274|Sfxn3|94280|sideroflexin 3	AF325262|Sfxn3|94280|sideroflexin 3	AK089985|Sfxn3|94280|sideroflexin 3	AK184595|Sfxn3|94280|sideroflexin 3	AK206211|Sfxn3|94280|sideroflexin 3	AK034514|Sfxn3|94280|sideroflexin 3
mm9_v1_chr13_+_91062722_91062758	0.179404	NANOG{mouse}.2	NM_024175|Rps23|66475|ribosomal protein S23	AK166994|Rps23|66475|ribosomal protein S23	AK010667|Rps23|66475|ribosomal protein S23
mm9_v1_chr3_+_89856713_89856975	0.177747	NANOG{mouse}.2	NM_025762|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	NM_027500|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK034749|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150324|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150423|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK150831|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK151002|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK151263|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK017833|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	BC018438|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK051238|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	BC027190|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AK214769|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene	AY533135|4933434E20Rik|99650|RIKEN cDNA 4933434E20 gene
mm9_v1_chr6_-_72548335_72548408	0.17639	NANOG{mouse}.2	AK049155|Elmod3|232089|ELMO/CED-12 domain containing 3	NM_144917|Elmod3|232089|ELMO/CED-12 domain containing 3	AK084010|Elmod3|232089|ELMO/CED-12 domain containing 3	AK164974|Elmod3|232089|ELMO/CED-12 domain containing 3
mm9_v1_chr5_-_87335956_87335985	0.173244	NANOG{mouse}.2	BC028826|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	NM_153598|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	AK145951|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34
mm9_v1_chr5_+_14514906_14514924	0.172186	NANOG{mouse}.2	NM_001110796|Pclo|26875|piccolo (presynaptic cytomatrix protein)	NM_011995|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19185|Pclo|26875|piccolo (presynaptic cytomatrix protein)	Y19186|Pclo|26875|piccolo (presynaptic cytomatrix protein)
mm9_v1_chr7_-_91300359_91300442	0.168906	NANOG{mouse}.2	BC018511|Fam108c|70178|family with sequence similarity 108, member C	NM_133722|Fam108c|70178|family with sequence similarity 108, member C
mm9_v1_chr13_-_117099629_117099895	0.166215	NANOG{mouse}.2	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr1_+_58267240_58267313	0.166131	NANOG{mouse}.2	AK158427|Aox4|71872|aldehyde oxidase 4	NM_023631|Aox4|71872|aldehyde oxidase 4	AK160953|Aox4|71872|aldehyde oxidase 4	AK081746|Aox4|71872|aldehyde oxidase 4	AF233581|Aox4|71872|aldehyde oxidase 4	BC117975|Aox4|71872|aldehyde oxidase 4	BC117976|Aox4|71872|aldehyde oxidase 4
mm9_v1_chr1_+_174246288_174246437	0.165523	NANOG{mouse}.2	BC026464|Igsf8|140559|immunoglobulin superfamily, member 8	AK183814|Igsf8|140559|immunoglobulin superfamily, member 8
mm9_v1_chr10_+_77085039_77085135	0.162678	NANOG{mouse}.2	AK154464|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK146554|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	BC010321|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	NM_019803|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK136365|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AF296657|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK183367|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2	AK185288|Ube2g2|22213|ubiquitin-conjugating enzyme E2G 2
mm9_v1_chr2_+_29989278_29989390	0.158236	NANOG{mouse}.2	AK158066|Tbc1d13|70296|TBC1 domain family, member 13	AK188413|Tbc1d13|70296|TBC1 domain family, member 13	BC025586|Tbc1d13|70296|TBC1 domain family, member 13	NM_146252|Tbc1d13|70296|TBC1 domain family, member 13
mm9_v1_chr2_-_92232731_92232888	0.153842	NANOG{mouse}.2	BC072578|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK147033|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK053819|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chrX_-_50622974_50623027	0.153833	NANOG{mouse}.2	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chr4_+_116269290_116269349	0.149215	NANOG{mouse}.2	AK029257|Ccdc17|622665|coiled-coil domain containing 17	NM_001037916|Ccdc17|622665|coiled-coil domain containing 17	BC150874|Ccdc17|622665|coiled-coil domain containing 17	BC172023|Ccdc17|622665|coiled-coil domain containing 17
mm9_v1_chr9_-_105397342_105397452	0.142673	NANOG{mouse}.2	AK032255|Atp2c1|235574|ATPase, Ca++-sequestering	AK028393|Atp2c1|235574|ATPase, Ca++-sequestering	BC043706|Atp2c1|235574|ATPase, Ca++-sequestering	AK159918|Atp2c1|235574|ATPase, Ca++-sequestering	AK163049|Atp2c1|235574|ATPase, Ca++-sequestering	BC043091|Atp2c1|235574|ATPase, Ca++-sequestering	AK052958|Atp2c1|235574|ATPase, Ca++-sequestering	NM_175025|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr9_-_113562595_113562606	0.142251	NANOG{mouse}.2	
mm9_v1_chr11_+_60230781_60230944	0.142125	NANOG{mouse}.2	AK164644|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC052418|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK012042|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC046821|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK142753|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC044901|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr17_+_34491766_34491876	0.138744	NANOG{mouse}.2	AK136521|Btnl2|547431|butyrophilin-like 2	NM_079835|Btnl2|547431|butyrophilin-like 2	BC141103|Btnl2|547431|butyrophilin-like 2
mm9_v1_chr7_+_27814096_27814122	0.137573	NANOG{mouse}.2	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr4_-_141241630_141241630	0.137416	NANOG{mouse}.2	BC150752|Rsc1a1|69994|regulatory solute carrier protein, family 1, member 1	NM_023544|Rsc1a1|69994|regulatory solute carrier protein, family 1, member 1
mm9_v1_chr17_+_28465521_28465543	0.136296	NANOG{mouse}.2	AK151172|Rpl10a|19896|ribosomal protein L10A	AK150743|Rpl10a|19896|ribosomal protein L10A	AK153863|Rpl10a|19896|ribosomal protein L10A	U12403|Rpl10a|19896|ribosomal protein L10A
mm9_v1_chr7_+_29135727_29135780	0.135475	NANOG{mouse}.2	AK011060|Rps16|20055|ribosomal protein S16	AK010613|Rps16|20055|ribosomal protein S16	AK010641|Rps16|20055|ribosomal protein S16	AK002904|Rps16|20055|ribosomal protein S16	AK088413|Rps16|20055|ribosomal protein S16	AK088716|Rps16|20055|ribosomal protein S16	AK169328|Rps16|20055|ribosomal protein S16	AK019400|Rps16|20055|ribosomal protein S16	AK083946|Rps16|20055|ribosomal protein S16	AK150808|Rps16|20055|ribosomal protein S16	AK168207|Rps16|20055|ribosomal protein S16	AK150615|Rps16|20055|ribosomal protein S16
mm9_v1_chr12_-_15823590_15823683	0.134946	NANOG{mouse}.2	NM_144551|Trib2|217410|tribbles homolog 2 (Drosophila)	AK144192|Trib2|217410|tribbles homolog 2 (Drosophila)
mm9_v1_chr4_+_43575487_43575594	0.134363	NANOG{mouse}.2	AK132785|Creb3|12913|cAMP responsive element binding protein 3	AK144208|Creb3|12913|cAMP responsive element binding protein 3	NM_013497|Creb3|12913|cAMP responsive element binding protein 3	AK090077|Creb3|12913|cAMP responsive element binding protein 3	BC002094|Creb3|12913|cAMP responsive element binding protein 3
mm9_v1_chr1_+_157005804_157006022	0.132082	NANOG{mouse}.2	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chr9_-_76893529_76893587	0.131992	NANOG{mouse}.2	AF153366|Tinag|26944|tubulointerstitial nephritis antigen	BC010745|Tinag|26944|tubulointerstitial nephritis antigen	AK008374|Tinag|26944|tubulointerstitial nephritis antigen	NM_012033|Tinag|26944|tubulointerstitial nephritis antigen
mm9_v1_chr1_+_159388702_159388722	0.129895	NANOG{mouse}.2	AK151310|BC026585|226527|cDNA sequence BC026585	BC026585|BC026585|226527|cDNA sequence BC026585	AK143913|BC026585|226527|cDNA sequence BC026585	NM_001033284|BC026585|226527|cDNA sequence BC026585
mm9_v1_chr15_-_74686747_74686747	0.128447	NANOG{mouse}.2	BC116908|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2	BC119321|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2	NM_009991|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2
mm9_v1_chr5_-_115750998_115751012	0.12831	NANOG{mouse}.2	NM_019682|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr7_+_50862538_50862594	0.127472	NANOG{mouse}.2	AK015213|Zfp819|74400|zinc finger protein 819	NM_028913|Zfp819|74400|zinc finger protein 819	AK016669|Zfp819|74400|zinc finger protein 819
mm9_v1_chr9_+_44287171_44287176	0.125367	NANOG{mouse}.2	AK078316|C030014I23Rik|77381|RIKEN cDNA C030014I23 gene
mm9_v1_chr1_+_74283079_74283111	0.125058	NANOG{mouse}.2	AK152356|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr6_+_125045998_125046234	0.122543	NANOG{mouse}.2	AK147695|Chd4|107932|chromodomain helicase DNA binding protein 4	AK040005|Chd4|107932|chromodomain helicase DNA binding protein 4	AK132004|Chd4|107932|chromodomain helicase DNA binding protein 4	BC058578|Chd4|107932|chromodomain helicase DNA binding protein 4	NM_145979|Chd4|107932|chromodomain helicase DNA binding protein 4	AK145532|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr11_+_67090625_67090855	0.121602	NANOG{mouse}.2	NM_177369|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021877|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021876|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	BC150737|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK029328|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK081482|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AK087387|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	AY963802|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal	DQ021878|Myh8|17885|myosin, heavy polypeptide 8, skeletal muscle, perinatal
mm9_v1_chr15_+_40486577_40486623	0.121289	NANOG{mouse}.2	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr6_-_6167086_6167104	0.118135	NANOG{mouse}.2	AK029020|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr4_-_43053029_43053168	0.11661	NANOG{mouse}.2	AK149610|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene	AK154748|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene	BC046771|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene
mm9_v1_chr14_+_18493380_18493473	0.116152	NANOG{mouse}.2	AK158826|Thrb|21834|thyroid hormone receptor beta	NM_001113417|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr17_+_28465415_28465507	0.115229	NANOG{mouse}.2	NM_011287|Rpl10a|19896|ribosomal protein L10A
mm9_v1_chr15_-_36538288_36538422	0.105381	NANOG{mouse}.2	BC023145|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	BC003870|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1
mm9_v1_chrX_-_50467567_50467581	0.104265	NANOG{mouse}.2	BC051666|Plac1|56096|placental specific protein 1	AF234653|Plac1|56096|placental specific protein 1	AF250838|Plac1|56096|placental specific protein 1	AK005501|Plac1|56096|placental specific protein 1	NM_019538|Plac1|56096|placental specific protein 1
mm9_v1_chr11_-_59850340_59850353	0.0960404	NANOG{mouse}.2	BC026796|Pemt|18618|phosphatidylethanolamine N-methyltransferase	NM_008819|Pemt|18618|phosphatidylethanolamine N-methyltransferase
mm9_v1_chr2_-_104334599_104334605	0.0951079	NANOG{mouse}.2	
mm9_v1_chr15_-_76039510_76039594	0.0949187	NANOG{mouse}.2	AK017743|Plec|18810|plectin	AF188017|Plec|18810|plectin	AF188018|Plec|18810|plectin	AY480035|Plec|18810|plectin	NM_201386|Plec|18810|plectin
mm9_v1_chr2_-_26766098_26766111	0.0928117	NANOG{mouse}.2	AK161053|Med22|20933|mediator complex subunit 22	AK166250|Med22|20933|mediator complex subunit 22
mm9_v1_chr17_-_26056379_26056705	0.088865	NANOG{mouse}.2	AB232639|Rab40c|224624|Rab40c, member RAS oncogene family	AF422144|Rab40c|224624|Rab40c, member RAS oncogene family	BC037461|Rab40c|224624|Rab40c, member RAS oncogene family	BC027008|Rab40c|224624|Rab40c, member RAS oncogene family	NM_139154|Rab40c|224624|Rab40c, member RAS oncogene family
mm9_v1_chr9_-_90009416_90009657	0.0844122	NANOG{mouse}.2	AK167079|Morf4l1|21761|mortality factor 4 like 1	AK164251|Morf4l1|21761|mortality factor 4 like 1	AK010528|Morf4l1|21761|mortality factor 4 like 1	AK011441|Morf4l1|21761|mortality factor 4 like 1	AK182816|Morf4l1|21761|mortality factor 4 like 1	AK218718|Morf4l1|21761|mortality factor 4 like 1	BC083094|Morf4l1|21761|mortality factor 4 like 1	AK152119|Morf4l1|21761|mortality factor 4 like 1	AK168585|Morf4l1|21761|mortality factor 4 like 1	AK168608|Morf4l1|21761|mortality factor 4 like 1	AK150925|Morf4l1|21761|mortality factor 4 like 1	AK220441|Morf4l1|21761|mortality factor 4 like 1	AK146210|Morf4l1|21761|mortality factor 4 like 1	AK168327|Morf4l1|21761|mortality factor 4 like 1	AK169065|Morf4l1|21761|mortality factor 4 like 1	AK168674|Morf4l1|21761|mortality factor 4 like 1	AB042241|Morf4l1|21761|mortality factor 4 like 1	AF319620|Morf4l1|21761|mortality factor 4 like 1	AF319621|Morf4l1|21761|mortality factor 4 like 1	BC085103|Morf4l1|21761|mortality factor 4 like 1	BC003894|Morf4l1|21761|mortality factor 4 like 1	BC017619|Morf4l1|21761|mortality factor 4 like 1	BC083118|Morf4l1|21761|mortality factor 4 like 1	BC092293|Morf4l1|21761|mortality factor 4 like 1	BC103783|Morf4l1|21761|mortality factor 4 like 1	AK011249|Morf4l1|21761|mortality factor 4 like 1	AK016414|Morf4l1|21761|mortality factor 4 like 1	NM_001039147|Morf4l1|21761|mortality factor 4 like 1	NM_024431|Morf4l1|21761|mortality factor 4 like 1
mm9_v1_chr8_+_108939222_108939238	0.0829975	NANOG{mouse}.2	AK032286|Zfp90|22751|zinc finger protein 90	AK154205|Zfp90|22751|zinc finger protein 90	NM_011764|Zfp90|22751|zinc finger protein 90
mm9_v1_chr12_+_83271002_83271165	0.08077	NANOG{mouse}.2	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr18_+_65185527_65185593	0.0800546	NANOG{mouse}.2	AK004969|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr6_-_6167113_6167172	0.0779022	NANOG{mouse}.2	AK151180|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK152237|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AF164632|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK150496|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_001177572|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_015829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr12_+_17273358_17273435	0.0778049	NANOG{mouse}.2	AK167386|Pdia6|71853|protein disulfide isomerase associated 6	AK152960|Pdia6|71853|protein disulfide isomerase associated 6	AK005989|Pdia6|71853|protein disulfide isomerase associated 6	AK133792|Pdia6|71853|protein disulfide isomerase associated 6	AK166111|Pdia6|71853|protein disulfide isomerase associated 6	AK168136|Pdia6|71853|protein disulfide isomerase associated 6	AK168279|Pdia6|71853|protein disulfide isomerase associated 6	AK076558|Pdia6|71853|protein disulfide isomerase associated 6	NM_027959|Pdia6|71853|protein disulfide isomerase associated 6	BC006865|Pdia6|71853|protein disulfide isomerase associated 6	AK151008|Pdia6|71853|protein disulfide isomerase associated 6	AK165877|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr3_-_89049756_89049818	0.077672	NANOG{mouse}.2	BC082299|Trim46|360213|tripartite motif-containing 46	NM_183037|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr9_-_20877907_20878057	0.0766907	NANOG{mouse}.2	AK010211|Fdx1l|68165|ferredoxin 1-like	AK008401|Fdx1l|68165|ferredoxin 1-like	AK020979|Fdx1l|68165|ferredoxin 1-like	NM_001039824|Fdx1l|68165|ferredoxin 1-like	BC061189|Fdx1l|68165|ferredoxin 1-like	BC172154|Fdx1l|68165|ferredoxin 1-like
mm9_v1_chr2_-_26766133_26766139	0.0738278	NANOG{mouse}.2	AK166474|Med22|20933|mediator complex subunit 22	AK144744|Med22|20933|mediator complex subunit 22
mm9_v1_chr9_+_57981881_57981881	0.0736217	NANOG{mouse}.2	NM_001162476|Stra6|20897|stimulated by retinoic acid gene 6
mm9_v1_chr2_-_91516101_91516113	0.0718565	NANOG{mouse}.2	BC024457|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr19_-_47611583_47611612	0.0699903	NANOG{mouse}.2	AK166348|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK146929|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1
mm9_v1_chr2_-_11475504_11475547	0.064303	NANOG{mouse}.2	AK143330|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr5_+_14514975_14515013	0.0613014	NANOG{mouse}.2	AB083477|Pclo|26875|piccolo (presynaptic cytomatrix protein)	AB083478|Pclo|26875|piccolo (presynaptic cytomatrix protein)
mm9_v1_chr19_+_40734282_40734322	0.0607346	NANOG{mouse}.2	AK030601|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	NM_009848|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	BC011278|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	AF037366|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1
mm9_v1_chr4_-_129055102_129055140	0.0605358	NANOG{mouse}.2	BC017614|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr11_-_76057153_76057185	0.0596127	NANOG{mouse}.2	AK010992|Glod4|67201|glyoxalase domain containing 4	AK007439|Glod4|67201|glyoxalase domain containing 4	AK138073|Glod4|67201|glyoxalase domain containing 4	AK012569|Glod4|67201|glyoxalase domain containing 4	AK013212|Glod4|67201|glyoxalase domain containing 4
mm9_v1_chr16_-_10543121_10543218	0.0538017	NANOG{mouse}.2	BC017551|Dexi|58239|dexamethasone-induced transcript	AK007644|Dexi|58239|dexamethasone-induced transcript	AK032104|Dexi|58239|dexamethasone-induced transcript	NM_021428|Dexi|58239|dexamethasone-induced transcript
mm9_v1_chr17_+_23990734_23990751	0.0523999	NANOG{mouse}.2	BC024903|Prss32|69814|protease, serine, 32	NM_027220|Prss32|69814|protease, serine, 32	AK008023|Prss32|69814|protease, serine, 32	AY266139|Prss32|69814|protease, serine, 32
mm9_v1_chr15_-_38230397_38230491	0.0473695	NANOG{mouse}.2	BC003316|Klf10|21847|Kruppel-like factor 10	Z36270|Klf10|21847|Kruppel-like factor 10	AK154719|Klf10|21847|Kruppel-like factor 10	AF064088|Klf10|21847|Kruppel-like factor 10	AK043433|Klf10|21847|Kruppel-like factor 10	AK079679|Klf10|21847|Kruppel-like factor 10	AF049879|Klf10|21847|Kruppel-like factor 10	NM_013692|Klf10|21847|Kruppel-like factor 10	AK004906|Klf10|21847|Kruppel-like factor 10
mm9_v1_chr15_-_82075137_82075176	0.0470881	NANOG{mouse}.2	AY243536|Cenpm|66570|centromere protein M	AY243537|Cenpm|66570|centromere protein M	AK011191|Cenpm|66570|centromere protein M	BC009160|Cenpm|66570|centromere protein M	AK168203|Cenpm|66570|centromere protein M	AK011227|Cenpm|66570|centromere protein M	AK011793|Cenpm|66570|centromere protein M	AK011755|Cenpm|66570|centromere protein M	AK010885|Cenpm|66570|centromere protein M	AK017679|Cenpm|66570|centromere protein M	AK011464|Cenpm|66570|centromere protein M	NM_025639|Cenpm|66570|centromere protein M	NM_178269|Cenpm|66570|centromere protein M
mm9_v1_chr2_-_35992076_35992223	0.0462042	NANOG{mouse}.2	AK008110|Rbm18|67889|RNA binding motif protein 18	AK021243|Rbm18|67889|RNA binding motif protein 18	AK036252|Rbm18|67889|RNA binding motif protein 18	BC005540|Rbm18|67889|RNA binding motif protein 18	AK035348|Rbm18|67889|RNA binding motif protein 18	AK036220|Rbm18|67889|RNA binding motif protein 18	AK135109|Rbm18|67889|RNA binding motif protein 18	NM_001159635|Rbm18|67889|RNA binding motif protein 18	NM_026434|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr6_+_142294174_142294216	0.0455474	NANOG{mouse}.2	AK148411|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	BC027061|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	BC022914|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	AK165677|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1	NM_183165|Pyroxd1|232491|pyridine nucleotide-disulphide oxidoreductase domain 1
mm9_v1_chr9_-_75459125_75459169	0.0452396	NANOG{mouse}.2	AK147581|Tmod2|50876|tropomodulin 2	NM_016711|Tmod2|50876|tropomodulin 2
mm9_v1_chr18_-_24179208_24179311	0.0428027	NANOG{mouse}.2	AK146726|Zfp191|59057|zinc finger protein 191	BC054832|Zfp191|59057|zinc finger protein 191	NM_021559|Zfp191|59057|zinc finger protein 191	AY832930|Zfp191|59057|zinc finger protein 191
mm9_v1_chr7_-_52894111_52894127	0.0420158	NANOG{mouse}.2	AK003910|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK049852|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK037147|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene
mm9_v1_chr8_+_77591417_77591420	0.0418273	NANOG{mouse}.2	AK181519|Tom1|21968|target of myb1 homolog (chicken)	AK214667|Tom1|21968|target of myb1 homolog (chicken)
mm9_v1_chr17_+_34781733_34781827	0.0416058	NANOG{mouse}.2	AK146018|Fkbpl|56299|FK506 binding protein-like	BC046338|Fkbpl|56299|FK506 binding protein-like	NM_019873|Fkbpl|56299|FK506 binding protein-like
mm9_v1_chr17_-_90487479_90487653	0.0386854	NANOG{mouse}.2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr13_-_74454770_74454775	0.0350319	NANOG{mouse}.2	NM_011051|Pdcd6|18570|programmed cell death 6
mm9_v1_chr7_+_120657336_120657425	0.0347376	NANOG{mouse}.2	AK005531|Far1|67420|fatty acyl CoA reductase 1	AK014405|Far1|67420|fatty acyl CoA reductase 1	AK011187|Far1|67420|fatty acyl CoA reductase 1	AK014486|Far1|67420|fatty acyl CoA reductase 1	NM_026143|Far1|67420|fatty acyl CoA reductase 1	NM_027379|Far1|67420|fatty acyl CoA reductase 1	BC007178|Far1|67420|fatty acyl CoA reductase 1	AK033674|Far1|67420|fatty acyl CoA reductase 1	AK030067|Far1|67420|fatty acyl CoA reductase 1
mm9_v1_chr6_+_97160736_97160744	0.0329284	NANOG{mouse}.2	D87211|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr7_-_97089575_97089723	0.0320138	NANOG{mouse}.2	BC083330|l7Rn6|67669|lethal, Chr 7, Rinchik 6	BC003916|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK012166|l7Rn6|67669|lethal, Chr 7, Rinchik 6	DQ196315|l7Rn6|67669|lethal, Chr 7, Rinchik 6	DQ196316|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK002306|l7Rn6|67669|lethal, Chr 7, Rinchik 6	NM_026304|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK003324|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK008604|l7Rn6|67669|lethal, Chr 7, Rinchik 6
mm9_v1_chr15_-_82074765_82074852	0.0296186	NANOG{mouse}.2	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr13_+_59234737_59234835	0.0286675	NANOG{mouse}.2	AK021108|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr2_-_164016293_164016343	0.0275083	NANOG{mouse}.2	BC030939|Wfdc12|192200|WAP four-disulfide core domain 12	NM_138684|Wfdc12|192200|WAP four-disulfide core domain 12	AF276975|Wfdc12|192200|WAP four-disulfide core domain 12	AK008999|Wfdc12|192200|WAP four-disulfide core domain 12
mm9_v1_chr17_+_23940151_23940238	0.0273226	NANOG{mouse}.2	AK171001|Srrm2|75956|serine/arginine repetitive matrix 2	NM_175229|Srrm2|75956|serine/arginine repetitive matrix 2	BC019803|Srrm2|75956|serine/arginine repetitive matrix 2	AK090123|Srrm2|75956|serine/arginine repetitive matrix 2	BC092355|Srrm2|75956|serine/arginine repetitive matrix 2	BC037186|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr11_-_76057188_76057228	0.0259003	NANOG{mouse}.2	BC061012|Glod4|67201|glyoxalase domain containing 4	NM_026029|Glod4|67201|glyoxalase domain containing 4
mm9_v1_chr5_+_136108487_136108731	0.0229653	NANOG{mouse}.2	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr12_-_86311718_86311851	0.0193512	NANOG{mouse}.2	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chr3_+_89049813_89049887	0.0187927	NANOG{mouse}.2	BC043030|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr10_-_67741461_67741487	0.0131358	NANOG{mouse}.2	AK029818|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK031596|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK017396|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	NM_023598|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AF280065|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)
mm9_v1_chrX_-_18038399_18038522	0.012946	NANOG{mouse}.2	AK085770|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	BC118515|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	NM_175228|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	AK016298|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene	AK163928|4930578C19Rik|75905|RIKEN cDNA 4930578C19 gene
mm9_v1_chr5_+_130535973_130536156	0.012334	NANOG{mouse}.2	
mm9_v1_chr5_-_135489006_135489022	0.00977568	NANOG{mouse}.2	AK008014|2010001M06Rik|69812|RIKEN cDNA 2010001M06 gene
mm9_v1_chr10_+_98725858_98725868	0.00774315	NANOG{mouse}.2	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr6_+_97160749_97160814	0.00569327	NANOG{mouse}.2	AF421860|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK077826|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	NM_022992|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK076519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK088205|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF133912|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	BC003897|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK008519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK005259|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF265214|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr7_+_97497207_97497237	0.00474944	NANOG{mouse}.2	BC052915|Sytl2|83671|synaptotagmin-like 2	AB057754|Sytl2|83671|synaptotagmin-like 2	AB057760|Sytl2|83671|synaptotagmin-like 2	AB057761|Sytl2|83671|synaptotagmin-like 2	AB057762|Sytl2|83671|synaptotagmin-like 2	NM_001040085|Sytl2|83671|synaptotagmin-like 2	NM_031394|Sytl2|83671|synaptotagmin-like 2	BC064769|Sytl2|83671|synaptotagmin-like 2	BC138714|Sytl2|83671|synaptotagmin-like 2	BC145398|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr12_+_62624880_62624934	0.0045072	NANOG{mouse}.2	AK220546|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr13_-_21532756_21532926	0.00384193	NANOG{mouse}.2	BC089360|Pgbd1|319207|piggyBac transposable element derived 1	BC059882|Pgbd1|319207|piggyBac transposable element derived 1	NM_001012311|Pgbd1|319207|piggyBac transposable element derived 1	NM_001162920|Pgbd1|319207|piggyBac transposable element derived 1	AK076559|Pgbd1|319207|piggyBac transposable element derived 1
mm9_v1_chr4_+_151699834_151699937	0.0020278	NANOG{mouse}.2	BC096390|Rpl22|19934|ribosomal protein L22
mm9_v1_chr2_-_11475555_11475702	0.0012583	NANOG{mouse}.2	NM_001177758|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK138807|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
